The Picornavirales include viruses that infect vertebrates, insects, and plants. It was believed that they pack only their genomic mRNA in the particles; thus, we envisaged these viruses as excellent model systems for studies of mRNA modifications. We used LC-MS to analyze digested RNA isolated from particles of the sacbrood and deformed wing iflaviruses as well as of the echovirus 18 and rhinovirus 2 picornaviruses. Whereas in the picornavirus RNAs we detected only N -methyladenosine and 2'-O-methylated nucleosides, the iflavirus RNAs contained a wide range of methylated nucleosides, such as 1-methyladenosine (m A) and 5-methylcytidine (m C). Mapping of m A and m C through RNA sequencing of the SBV and DWV RNAs revealed the presence of tRNA molecules. Both modifications were detected only in tRNA. Further analysis revealed that tRNAs are present in form of 3' and 5' fragments and they are packed selectively. Moreover, these tRNAs are typically packed by other viruses.
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http://dx.doi.org/10.1002/cbic.202200281 | DOI Listing |
J Virol Methods
July 2024
Entomology and Nematology Department, University of Florida, 1881 Natural Area Dr., Gainesville, FL 32611, USA.
Viruses in the families Dicistroviridae and Iflaviridae are among the main threats to western honey bees (Apis mellifera) and native bee species. Polymerase chain reaction (PCR) is the gold standard for pathogen detection in bees. However, high throughput screening for bee virus infections in singleplex PCR reactions is cumbersome and limited by the high quantities of sample RNA required.
View Article and Find Full Text PDFOpen Vet J
July 2023
Institut für Mikrobiologie, Technische Universität Braunschweig, Braunschweig, Germany.
Background: Honeybees are one of the three most important animals for mankind. In order to be safe and increase number of bee colonies for pollination, the breeding of queens is necessary. For several decades, bees were selected on economic and behavioral aspects.
View Article and Find Full Text PDFChembiochem
September 2022
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nam. 2, 16610, Prague 6, Czech Republic.
Viruses
May 2022
Department of Laboratory Medicine and Pathology, University of Washington Medical Center, Seattle, WA 98195, USA.
Arthropods are integral to ecosystem equilibrium, serving as both a food source for insectivores and supporting plant reproduction. Members of the family in the order are frequently found in RNA sequenced from arthropods, who serve as their hosts. Here we implement a metagenomic deep sequencing approach followed by rapid amplification of cDNA ends (RACE) on viral RNA isolated from wild and captured bat guano in Washington State at two separate time points.
View Article and Find Full Text PDFMicrobiol Spectr
June 2022
Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Jiangsu Province, China.
Deformed wing virus (DWV) is the most prevalent Iflavirus that is infecting honey bees worldwide. However, the mechanisms of its infection and replication in host cells are poorly understood. In this study, we analyzed the structure and function of DWV 3C protease (3C), which is necessary for the cleavage of the polyprotein to synthesize mature viral proteins.
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