Random forest (RF) and MaxEnt models are shallow machine learning approaches that perform well in predicting species' potential distributions. RF models can produce robust results with the default automatic configuration in most cases, but it is necessary for MaxEnt to optimize the model settings to improve the performance, and the predictive performance difference between optimized MaxEnt and RF is uncertain. To explore this issue, the potential distribution of the endangered amphibian Quasipaa boulengeri in China was predicted using optimized MaxEnt and RF models. A total of 408 occurrence data were selected, 1000 locations were generated as pseudo-absence data by the geographic distance method, and 10,000 sites were selected as background data by creating a bias file. Partial ROC at different thresholds and success rate curves were used to compare the predictive performances between optimized MaxEnt and RF. Our results showed that the RF and optimized MaxEnt models both had good performance in predicting the potential distribution of Q. boulengeri, with the RF model performing slightly better whether based on partial ROC or success rate curves. Furthermore, the core suitable habitat regions of Q. boulengeri identified by RF and MaxEnt were similar and were all located in the Sichuan, Chongqing, Hubei, Hunan, and Guizhou provinces. However, the RF model produced a habitat suitability map with higher discrimination and greater heterogeneity. Temperature annual range, mean temperature of the driest quarter, and annual precipitation were the vital environmental variables limiting the distribution of Q. boulengeri. The RF model is the stronger machine learner. We believe it may be more applicable in predicting the native potential distributions of species with sufficient occurrence data, given the additional predictive detail, the simplicity of use, the computational time involved, and the operational complexity.
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http://dx.doi.org/10.1016/j.scitotenv.2022.156867 | DOI Listing |
Environ Monit Assess
January 2025
Qinghai Provincial Key Laboratory of Tibetan Medicine Research, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai, China.
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View Article and Find Full Text PDFPlants (Basel)
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Shaanxi Key Laboratory of Ecological Restoration in Northern Shaanxi Mining Area, College of Life Science, Yulin University, Yulin 719000, China.
The genus of L. are Tertiary-relict desert sand-fixing plants, which are an important forage and agricultural product, as well as an important source of medicinal and woody vegetable oil. In order to provide a theoretical basis for better protection and utilization of species in the L.
View Article and Find Full Text PDFJ Am Chem Soc
January 2025
Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States.
Generative artificial intelligence (AI) models trained on natural protein sequences have been used to design functional enzymes. However, their ability to predict individual reaction steps in enzyme catalysis remains unclear, limiting the potential use of sequence information for enzyme engineering. In this study, we demonstrated that sequence information can predict the rate of the S2 step of a haloalkane dehalogenase using a generative maximum-entropy (MaxEnt) model.
View Article and Find Full Text PDFInsects
December 2024
Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou 510260, China.
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View Article and Find Full Text PDFInsects
December 2024
School of Architecture and Urban Planning, Shenzhen University, Shenzhen 518060, China.
Invasive alien species often undergo shifts in their ecological niches when they establish themselves in environments that differ from their native habitats. Fisher LaSalle (Hymenoptera: Eulophidae), specifically, has caused huge economic losses to trees in Australia. The global spread of cultivation has allowed to threaten plantations beyond its native habitat.
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