It is well known that viroids promote significant alterations at diverse host regulatory levels. However the mechanisms by which these tiny RNAs subvert endogenous regulatory networks remain a to a large extent unsolved question. In the last years diverse studies have revealed the existence of a close interplay between viroid infection and host DNA methylation, suggesting that the modulation of the endogenous transcriptional activity by epigenetic alterations of the host genome may emerge as a novel player in plant-viroid interactions. Here, we summarize the more relevant findings related to alteration of the host DNA methylome in response to viroid infection and discus the potential strategies which may be exploited by these non-conventional pathogenic RNAs to hijack and redesign the plant epigenome.
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http://dx.doi.org/10.1016/j.virusres.2022.198844 | DOI Listing |
Nat Med
January 2025
Merkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Prion disease is a fatal neurodegenerative disease caused by the misfolding of prion protein (PrP) encoded by the PRNP gene. While there is currently no cure for the disease, depleting PrP in the brain is an established strategy to prevent or stall templated misfolding of PrP. Here we developed in vivo cytosine and adenine base strategies delivered by adeno-associated viruses to permanently modify the PRNP locus to achieve PrP knockdown in the mouse brain.
View Article and Find Full Text PDFInt J Mol Sci
December 2024
Department of Crop Production, University of Rzeszow, Zelwerowicza 4, 35-601 Rzeszow, Poland.
Plants are increasingly exposed to stress-induced factors, including heavy metals. Zinc, although it is a microelement, at high concentrations can be phytotoxic to plants by limiting their growth and development. The presented research confirmed the inhibition effect of Zn on morphological and physiological parameters in barley plants.
View Article and Find Full Text PDFBrief Bioinform
November 2024
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No. 97 Buxin Road, Dapeng New District, Shenzhen 518124, China.
Identifying the regulatory effects of noncoding variants presents a significant challenge. Recently, the accumulation of epigenomic profiling data in wheat has provided an opportunity to model the functional impacts of these variants. In this study, we introduce Language of Genome for Wheat (LOGOWheat), a deep learning-based tool designed to predict the regulatory effects of noncoding variants in wheat.
View Article and Find Full Text PDFGenome Biol Evol
January 2025
Department of Biology, University of Florence, 50019 Sesto Fiorentino, Italy.
In prokaryotes, DNA methylation plays roles in DNA repair, gene expression, cell cycle progression, and immune recognition of foreign DNA. Genome-wide methylation patterns can vary between strains, influencing phenotype, and gene transfer. However, broader evolutionary studies on bacterial epigenomic variation remain limited.
View Article and Find Full Text PDFNature
January 2025
Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Plants lack specialized and mobile immune cells. Consequently, any cell type that encounters pathogens must mount immune responses and communicate with surrounding cells for successful defence. However, the diversity, spatial organization and function of cellular immune states in pathogen-infected plants are poorly understood.
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