Self-supervised methods gain more and more attention, especially in the medical domain, where the number of labeled data is limited. They provide results on par or superior to their fully supervised competitors, yet the difference between information coded by both methods is unclear. This work introduces a novel comparison framework for explaining differences between supervised and self-supervised models using visual characteristics important to the human perceptual system. We apply this framework to models trained for Gleason score and conclude that self-supervised methods are more biased toward contrast and texture transformation than their supervised counterparts. At the same time, supervised methods code more information about the shape.
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http://dx.doi.org/10.3233/SHTI220263 | DOI Listing |
Sensors (Basel)
December 2024
CeMOS Research and Transfer Center, Mannheim University of Applied Sciences, 68163 Mannheim, Germany.
Advancements in Raman light sheet microscopy have provided a powerful, non-invasive, marker-free method for imaging complex 3D biological structures, such as cell cultures and spheroids. By combining 3D tomograms made by Rayleigh scattering, Raman scattering, and fluorescence detection, this modality captures complementary spatial and molecular data, critical for biomedical research, histology, and drug discovery. Despite its capabilities, Raman light sheet microscopy faces inherent limitations, including low signal intensity, high noise levels, and restricted spatial resolution, which impede the visualization of fine subcellular structures.
View Article and Find Full Text PDFSensors (Basel)
December 2024
School of Electrical Engineering, Korea University, Seoul 02841, Republic of Korea.
In this study, we propose a novel framework for time-series representation learning that integrates a learnable masking-augmentation strategy into a contrastive learning framework. Time-series data pose challenges due to their temporal dependencies and feature-extraction complexities. To address these challenges, we introduce a masking-based reconstruction approach within a contrastive learning context, aiming to enhance the model's ability to learn discriminative temporal features.
View Article and Find Full Text PDFLife (Basel)
November 2024
Clinical Omics Institute, Kyungpook National University, Daegu 41405, Republic of Korea.
Cervical cancer is a significant health challenge, yet it can be effectively prevented through early detection. Cytology-based screening is critical for identifying cancerous and precancerous lesions; however, the process is labor-intensive and reliant on trained experts to scan through hundreds of thousands of mostly normal cells. To address these challenges, we propose a novel distribution-augmented approach using contrastive self-supervised learning for detecting abnormal squamous cervical cells from cytological images.
View Article and Find Full Text PDFBioengineering (Basel)
December 2024
Department of Medical Biophysics, University of Toronto, Toronto, ON M4N 3M5, Canada.
Most existing methods for magnetic resonance imaging (MRI) reconstruction with deep learning use fully supervised training, which assumes that a fully sampled dataset with a high signal-to-noise ratio (SNR) is available for training. In many circumstances, however, such a dataset is highly impractical or even technically infeasible to acquire. Recently, a number of self-supervised methods for MRI reconstruction have been proposed, which use sub-sampled data only.
View Article and Find Full Text PDFBioengineering (Basel)
December 2024
Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford OX3 7DQ, UK.
Cardiovascular diseases (CVDs) are the most common health threats worldwide. 2D X-ray invasive coronary angiography (ICA) remains the most widely adopted imaging modality for CVD assessment during real-time cardiac interventions. However, it is often difficult for the cardiologists to interpret the 3D geometry of coronary vessels based on 2D planes.
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