Cytotoxicity, molecular function disorder, mitophagy, and apoptosis were studied in loach fin cells in vitro after exposure to doxycycline (DOX). The semi-lethal concentration of DOX in loach cells was calculated as 668.96 ± 2.83 mol/L. Loss of cell viability and increases in vacuoles and autolysosomes were evident in cells exposed to DOX at 200 and 400 μmol/L, and apoptotic bodies occurred at 600 μmol/L. In addition, Superoxide Dismutase (SOD), catalase (CAT), Na-K-ATPase, and Ca-ATPase activities increased significantly in cells exposed to 200 μmol/L DOX, and dose-dependent inhibitory effects on activities were observed in cells exposed to 400 and 600 μmol/L DOX. Quantitative gene expression showed that 400 and 600 μmol/L DOX could induce caspase-3- and caspase-8-mediated apoptosis as well as caspase-activated DNase in loach cells. Transcriptome sequencing in DOX vs. control groups found 16,288 differentially expressed genes, among which protein binding (2633, 31.91%) was the most significant in Gene Ontology terms. Furthermore, 11,930 genes were enriched in 298 Kyoto Encyclopedia of Genes and Genomes (KEGG)pathways. The top three upregulated pathways included "lysosome", "protein processing in endoplasmic reticulum", and "proteasome". FPKM analysis indicated that most genes associated with autophagy and in "protein processing in the endoplasmic reticulum", "TNF signaling pathway", and "NF-kappa B signaling pathway" were upregulated. This suggests that at lower concentrations, DOX induces reactive oxidative species (ROS) in loach fin cells to reduce cell proliferation. ROS in turn stimulate oxidant stress, ion excretion capability and mitophagy to maintain cell homeostasis. Apoptosis was induced in cells subjected to higher concentrations of DOX. The transcriptome data and pathways determined in this study will provide a foundation for the analysis of DOX toxicity in loach cells, which must be examined thoroughly to further understand the cytotoxic mechanism of antibiotics in fish cells.
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http://dx.doi.org/10.1016/j.scitotenv.2022.156379 | DOI Listing |
Int J Biol Sci
January 2025
Department of Biology, University of Padova, Padua, Italy.
Stat3 is a transcription factor with a key role in cell proliferation and migration. Using the zebrafish line we showed that the genetic ablation results in a marked decrease of tail fin regrowth, demonstrating that this transcription factor is fundamental in the regeneration process. Stat3 activity is finely modulated by post-translational modifications that occur in several residues of the protein (i.
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December 2024
Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510380, China.
The ratmouth barbel (Ptychidio jordani) is a critically endangered freshwater fish from the Cyprinidae family, primarily due to overfishing and habitat disruption. To address the challenges of its shrinking wild populations and the difficulties in artificial reproduction, we sequenced, assembled, and annotated a high-quality chromosome-level genome of P. jordani using next-generation short-read sequencing, third-generation long-read sequencing, and Hi-C sequencing.
View Article and Find Full Text PDFSemin Cell Dev Biol
February 2025
Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan. Electronic address:
The intricate control of collective cell dynamics is crucial for enabling organismic development and tissue regeneration. Despite the availability of various in vitro and in vivo models, studies on tissue-scale cell dynamics and associated emergent properties in living systems remain methodically challenging. Here, we describe key advantages of using the adult zebrafish tailfin (caudal fin) as a robust in vivo model for dissecting millimeter-scale collective cell dynamics during regeneration and wound healing in a complex tissue.
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September 2024
Zoological Survey of India; Freshwater Fish Section; 27 JL Nehru Road; Kolkata; 700016 India.
A new species of Garra (Labeoninae) is described from the Zubza River, a headwater of the Brahmaputra River basin, in Kohima district of Nagaland, North-eastern India. The new species is distinguished by the following combination of characters: a black spot located on the principal ray and first three branched rays of the dorsal (upper) lobe distal part, as well as a black submarginal V-shaped band on the principal ray and whole branched rays of the ventral (lower) lobe of caudal fin; snout with weakly-developed proboscis represented by slightly upwards elevated hump, with no transverse groove and no transverse lobe, and with 10-12 small tubercles on anterodorsal marginal aspect; 34 lateral-line scales including two pored scales on caudal fin; absence of scales on chest and presence of poorly developed scales on belly; relatively shorter caudal peduncle (10.7-12.
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