Novel Bruton's Tyrosine Kinase (BTK) Substrates for Time-Resolved Luminescence Assays.

ACS Chem Biol

University of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics, 420 Washington Avenue SE, Minneapolis, Minnesota 55455, United States.

Published: June 2022

Bruton's tyrosine kinase (BTK) is a well-documented target for cancer therapeutics due to its role in B-cell signaling pathways. However, inhibitor design is hindered by lack of tools to assess kinase activity. We used in vitro phosphoproteomics to determine BTK's substrate preferences and applied this information to our updated data processing pipeline, KINATEST-ID 2.1.0. This pipeline generates a position-specific scoring matrix for BTK and a list of candidate synthetic substrates, each given a score. Characterization of selected synthetic substrates demonstrated a correlation between KINATEST-ID 2.1.0 score and biochemical performance in in vitro kinase assays. Additionally, by incorporating a known terbium-chelation motif, we adapted synthetic substrates for use in an antibody-free time-resolved terbium luminescence assay. This assay has applications in high-throughput inhibitor screening.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10041687PMC
http://dx.doi.org/10.1021/acschembio.2c00106DOI Listing

Publication Analysis

Top Keywords

synthetic substrates
12
bruton's tyrosine
8
tyrosine kinase
8
kinase btk
8
kinatest-id 210
8
novel bruton's
4
kinase
4
substrates
4
btk substrates
4
substrates time-resolved
4

Similar Publications

The cyanobacterium causes harmful algal blooms that pose a major threat to human health and ecosystem services, particularly due to the prevalence of the potent hepatotoxin microcystin (MC). With their pronounced EPS layer, colonies also serve as a hub for heterotrophic phycosphere bacteria. Here, we tested the hypothesis that the genotypic plasticity in its ability to produce MC influences the composition and assembly of the phycosphere microbiome.

View Article and Find Full Text PDF

Standardized Approach for Diversification of Complex Small Molecules via Aryl Thianthrenium Salts.

J Am Chem Soc

January 2025

Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, Mülheim an der Ruhr 45470, Germany.

Thianthrenation is a useful strategy for the late-stage diversification of complex small molecules owing to the positional selectivity and the synthetic versatility of thianthrenium salts as electrophilic linchpins. However, substrate-dependent identification of suitable reaction conditions for thianthrenation can be difficult. Reported reaction conditions for the functionalization of thianthrenium salts vary significantly and, in some instances, lack robustness and practicality.

View Article and Find Full Text PDF

Dioxiranes and their heavier chalcogen analogs have long been recognized as pivotal reagents and intermediates in synthetic chemistry, while trioxetanes have largely remained theoretical constructs. In this work, we present the synthesis of neutral, isoelectronic aluminum/chalcogen analogs of dioxiranes and trioxetanes, specifically aluminadiselenirane, aluminaditellurirane, aluminatriselenetane, aluminatritelluretane, and a mixed Se/Te analog of aluminatrichalcogenetane. These compounds, featuring strained AlCh2 and AlCh3 ring (Ch = Se, Te), exhibit significant polarization between the aluminum and chalcogen components.

View Article and Find Full Text PDF

Silk fiber, produced by the silkworm , is a protein fiber with an excellent mechanical strength and broad biocompatibility. Multiple approaches, including genetic and chemical methods, must be combined to tailor silk fiber properties for wide applications, such as textiles and biomaterials. Genetic code expansion (GCE) is an alternative method to alter proteins' chemical and physical properties by incorporating synthetic amino acids into their primary structures.

View Article and Find Full Text PDF

Metabolic Engineering of Yeast.

Annu Rev Biophys

January 2025

1Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China.

Microbial cell factories have been developed to produce various compounds in a sustainable and economically viable manner. The yeast has been used as a platform cell factory in industrial biotechnology with numerous advantages, including ease of operation, rapid growth, and tolerance for various industrial stressors. Advances in synthetic biology and metabolic models have accelerated the design-build-test-learn cycle in metabolic engineering, significantly facilitating the development of yeast strains with complex phenotypes, including the redirection of metabolic fluxes to desired products, the expansion of the spectrum of usable substrates, and the improvement of the physiological properties of strain.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!