Earth Biogenome Project (EBP) is an ambitious project targeted to provide high-quality reference genome sequences for all 1.8 million named extant (living) eukaryote species. The project was launched on 1 November 2018 with an initial 2 years' pilot phase (2018-2020) followed by Phase I (2020-2023), during which genomes of 9400 species will be sequenced. The genomes of the remaining ~1.7 million species will be sequenced in a planned manner during Phase II (2024-2027) and Phase III (2028-2030). In view of the excitement generated and the progress already made, the subject was covered in a Special Feature of a recent issue of PNAS (25 January 2022). The present status and future plans of EBP along with challenges faced are briefly discussed in this article.
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http://dx.doi.org/10.1016/j.tig.2022.04.008 | DOI Listing |
The Darwin Tree of Life (DToL) project aims to generate high-quality reference genomes for all eukaryotic organisms in Britain and Ireland. At the time of writing, PacBio HiFi reads are generated for all samples using the Sequel IIe systems by the Wellcome Sanger Institute's Scientific Operations teams, however we expect lessons from this work to apply directly to the Revio system too, as core principles of SMRT sequencing remain the same. We observed that HiFi yield is highly variable for DToL samples.
View Article and Find Full Text PDFWellcome Open Res
October 2024
Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
Biodiversity genomics critically depends on correct taxonomic identification of the sample from which data are derived. Tracking of that taxonomic information through systems that archive data and report on genome sequencing efforts. For submission of data to the International Nucleotide Sequence Database Collaboration (INSDC) databases (DNA DataBank of Japan [DDBJ], European Nucleotide Archive [ENA] and National Center for Biotechnology Information [NCBI]), samples and data derived from them must be assigned a species-level NCBI Taxonomy taxonomic identifier (TaxId, sometimes referred to as taxId or txid).
View Article and Find Full Text PDFStill looking for funds, Earth BioGenome Project has compiled 3000 eukaryotic genomes.
View Article and Find Full Text PDFNPJ Biodivers
September 2024
Leibniz Institut für Zoo und Wildtierforschung, Berlin, Germany.
J Hered
September 2024
Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo.
The common eider, Somateria mollissima mollissima (Chordata; Aves; Anseriformes; Anatidae), is a large sea duck with a circumpolar distribution. We here describe a chromosome-level genome assembly from an individual female. The haplotype-resolved assembly contains one pseudo-haplotype spanning 1205 megabases (with both Z and W sex chromosomes) and one pseudo-haplotype spanning 1080 megabases.
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