A novel mesophilic and neutrophilic sulfate-reducing bacterium, strain SF6, was isolated from sediment of a brackish lake in Japan. Cells of strain SF6 were motile and rod-shaped with length of 1.2-2.5 μm and width of 0.6-0.9 μm. Growth was observed at 10-37 °C with an optimum growth temperature of 28 °C. The pH range for growth was 5.8-8.2 with an optimum pH of 7.0. The most predominant fatty acid was anteiso-C. Under sulfate-reducing conditions, strain SF6 utilized lactate, ethanol and glucose as growth substrate. Chemolithoautotrophic growth on H was not observed, although H was used as electron donor. Fermentative growth occurred on pyruvate. As electron acceptor, sulfate, sulfite, thiosulfate and nitrate supported heterotrophic growth of the strain. The complete genome of strain SF6 is composed of a circular chromosome with length of 3.8 Mbp and G+C content of 54 mol%. Analyses of the 16S rRNA gene and whole genome sequence indicated that strain SF6 belongs to the genus Pseudodesulfovibrio but distinct form all existing species in the genus. On the basis of its genomic and phenotypic properties, strain SF6 (= DSM111931 = NBRC 114895) is proposed as the type strain of a new species, with name of Pseudodesulfovibrio sediminis sp. nov.
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http://dx.doi.org/10.1007/s00203-022-02870-5 | DOI Listing |
mBio
January 2025
Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
mSphere
December 2023
Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Given the genomic diversity between serotypes and the paucity of data to support serotype-specific phenotypic differences, we applied and functional analyses of archetype strains of 2457T (2a), J17B (3a), and CH060 (6). These archetype strains represent the three leading serotypes recommended for inclusion in multivalent vaccines. Characterizing the genomic and phenotypic variation among these clinically prevalent serotypes is an important step toward understanding serotype-specific host-pathogen interactions to optimize the efficacy of multivalent vaccines and therapeutics.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
April 2023
Department of Marine Science and Technology, Fukui Prefectural University, Obama, Fukui 917-0003, Japan.
A novel sulphate-reducing bacterium, strain SYK, was isolated from a xenic culture of an anaerobic protist obtained from a sulphidogenic sediment of the saline Lake Hiruga in Fukui, Japan. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that SYK clustered with the members of the genus . The closest relative of strain SYK was SF6, with 16S rRNA gene sequence identity of 97.
View Article and Find Full Text PDFLangmuir
February 2023
Henan Key Laboratory of Materials on Deep-Earth Engineering, School of Materials Science and Engineering, Henan Polytechnic University, Jiaozuo 454000, Henan, China.
The application of intrinsic and transition metals (TM)-doped VSe monolayers for the detection of faulty gases in SF electrical insulated equipment is investigated based on first-principles calculations. The electron density difference, density of state, and adsorption energy are analyzed to further clarify the reaction mechanism. The results show that the intrinsic VSe monolayer has weak adsorption performance for SO and SOF molecules, but the adsorption properties of the system are significantly improved after doping TM atoms.
View Article and Find Full Text PDFPathogens
October 2022
Food, Nutrition and Health, University of British Columbia, 120-2205 East Mall, Vancouver, BC V6R 1Z4, Canada.
Nontyphoidal Salmonella enterica is one of the leading pathogens for foodborne outbreaks in a multitude of food commodities, including alfalfa sprouts, which are commonly consumed raw. The food industry has commonly used chlorinated washes, but such methods may not be perceived as natural; this can be a detriment as a large portion of sprouts are designated for the organic market. A natural and affordable antimicrobial method that has been acquiring popularity is the use of bacteriophages.
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