and as Potential Biomarkers of Diabetes-Related Sepsis.

Biomed Res Int

Department of Emergency, The Fourth Hospital of Hebei Medical University, 12th Health Road, Shijiazhuang, Hebei 050011, China.

Published: April 2022

AI Article Synopsis

  • - The study investigates potential biomarkers for diabetes-related sepsis (DRS) by analyzing gene expression data from multiple datasets, identifying differentially expressed genes (DEGs) related to both diabetes and sepsis.
  • - Using methods like gene set enrichment analysis (GSEA) and weighted gene co-expression network analysis (WGCNA), researchers explored key functional pathways and modules that connect diabetes and sepsis, revealing important biological processes and hub genes involved in DRS development.
  • - The findings highlight 7457 diabetes-related DEGs and 2606 sepsis-related DEGs, with specific modules linked to metabolic processes and oxidative phosphorylation, and validate the significance of identified hub genes through both mouse models and a neural network prediction model. *

Article Abstract

Patients with diabetes are physiologically frail and more likely to suffer from infections and even life-threatening sepsis. This study aimed to identify and verify potential biomarkers of diabetes-related sepsis (DRS). Datasets GSE7014, GSE57065, and GSE95233 from the Gene Expression Omnibus were used to explore diabetes- and sepsis-related differentially expressed genes (DEGs). Gene set enrichment analysis (GSEA) and functional analyses were performed to explore potential functions and pathways associated with sepsis and diabetes. Weighted gene co-expression network analysis (WGCNA) was performed to identify diabetes- and sepsis-related modules. Functional enrichment analysis was performed to determine the characteristics and pathways of key modules. Intersecting DEGs that were also present in key modules were considered as common DEGs. Protein-protein interaction (PPI) network and key genes were analyzed to screen hub genes involved in DRS development. A mouse C57 BL/6J-DRS model and a neural network prediction model were constructed to verify the relationship between hub genes and DRS. In total, 7457 diabetes-related DEGs and 2606 sepsis-related DEGs were identified. GSEA indicated that gene datasets associated with diabetes and sepsis were mainly enriched in metabolic processes linked to inflammatory responses and reactive oxygen species, respectively. WGCNA indicated that grey60 and brown modules were diabetes- and sepsis-related key modules, respectively. Functional analysis showed that grey60 module genes were mainly enriched in cell morphogenesis, heart development, and the PI3K-Akt signaling pathway, whereas genes from the brown module were mainly enriched in organelle inner membrane, mitochondrion organization, and oxidative phosphorylation. , , , , , and were identified as hub genes in the PPI network. Animal DRS and neural network prediction models indicated that the expression levels of and in DRS models and samples were higher than control mice. UBE2D1 and COX7C were identified as potential biomarkers of DRS. These findings may help develop treatment strategies for DRS.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9015863PMC
http://dx.doi.org/10.1155/2022/9463717DOI Listing

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