In Escherichia coli K-12, RecA binds to single-strand DNA (ssDNA) created by DNA damage to form a protein-DNA helical filament that serves to catalyze LexA autoproteolysis, which induces the SOS response. The SOS constitutive (SOS) mutations (E38K) and (Q184K) are both on the outside of the RecA filament, opposite to the face that binds DNA. (E38K) is also able to suppress the UV sensitivity caused by mutations. Both SOS expression and suppression are thought to be due to RecA730's ability to compete better for ssDNA coated with ssDNA-binding protein than the wild type. We tested whether other positively charged residues at these two positions would lead to SOS expression and suppression. We found that 5/6 positively charged residues were SOS and 4/5 of these were also suppressors. While other mutations at these two positions (and others) were suppressors, none were SOS. Three suppressors could be made moderately SOS by adding a operator mutation. We hypothesize two mechanisms for SOS expression: the first suggests that the positive charge at positions 38 and 184 attract negatively charged molecules that block interactions that would destabilize the RecA-DNA filament, and the second involves more stable filaments caused by increases in mutant RecA concentration. In Escherichia coli K-12, SOS constitutive (SOS) mutants of turn on the SOS response in the absence of DNA damage. Some SOS mutants are also able to indirectly suppress the UV sensitivity of mutations. Two SOS mutations, (E38K) and (Q184K), define a surface on the RecA-DNA filament opposite the surface that binds DNA. Both introduce positive charges, and is a suppressor. We tested whether the positive charge at these two positions was required for SOS expression and suppression. We found a high correlation between the positive charge, SOS expression and suppression. We also found several other mutations (different types) that provide suppression but no SOS expression.
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http://dx.doi.org/10.1128/jb.00081-22 | DOI Listing |
ISME J
January 2025
State Key Laboratory for Ecological Security of Regions and Cities, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, Xiamen 361021, China.
Protozoa, as primary predators of soil bacteria, represent an overlooked natural driver in the dissemination of antibiotic resistance genes. However, the effects of protozoan predation on antibiotic resistance genes dissemination at the community level, along with the underlying mechanisms, remain unclear. Here we used fluorescence-activated cell sorting, qPCR, combined with metagenomics and reverse transcription quantitative PCR, to unveil how protozoa (Colpoda steinii and Acanthamoeba castellanii) influence the plasmid-mediated transfer of antibiotic resistance genes to soil microbial communities.
View Article and Find Full Text PDFPlant Cell Environ
January 2025
Research Center of Genetic Resources, National Agriculture and Food Research Organization, Ibaraki, Japan.
Vigna marina (Barm.) Merr. is adapted to tropical marine beaches and has an outstanding tolerance to salt stress.
View Article and Find Full Text PDFbioRxiv
January 2025
Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
The activity of DNA adenine methyltransferase (Dam) and DNA cytosine methyltransferase (Dcm) together account for nearly all methylated nucleotides in the K-12 MG1655 genome. Previous studies have shown that perturbation of DNA methylation alters global gene expression, but it is unclear whether the methylation state of Dam or Dcm target sites regulates local transcription. In recent genome-wide experiments, we observed an underrepresentation of Dam sites in transcriptionally silent extended protein occupancy domains (EPODs), prompting us to hypothesize that EPOD formation is caused partially by low Dam site density.
View Article and Find Full Text PDFJ Infect Dis
January 2025
Division of Environmental Health Sciences, School of Public Health, University of Minnesota, St. Paul, MN 55108, USA.
Shiga toxin-producing Escherichia coli (STEC) infections pose a significant public health challenge, characterized by severe complications including hemolytic uremic syndrome (HUS) due to Shiga toxin (Stx) production. Current therapeutic approaches encounter a critical limitation, as conventional antibiotic treatment is contraindicated due to its propensity to trigger bacterial SOS response and subsequently enhance Stx production, which increases the likelihood of developing HUS in antibiotic-treated patients. The lack of effective, safe therapeutic options has created an urgent need for alternative treatment strategies for STEC infections.
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January 2025
School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China. Electronic address:
Soil salinization is a major environmental stress limiting plant growth and development, affecting crop yields worldwide. We investigated the role of AtDPBF3, encoding a key member of the ABI5 subfamily, in the response to salt stress. The AtDPBF3 mutant (dpbf3) was significantly more sensitive to salt stress compared with wild type.
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