Nucleocidin 1 produced by is one of five characterized natural products containing fluorine. It was discovered in 1956, but its biosynthesis is not yet completely resolved. Recently, the biosynthetic gene cluster of 1 was identified. The gene, which was initially annotated as and encodes a putative purine nucleoside phosphorylase, is essential for nucleocidin production. In this study, we performed assays and showed NucPNP produced adenine 3 from methylthioadenosine (MTA) 2 and adenosine 4. We also showed the downstream enzyme, NucV annotated as adenine phosphoribosyltransferase (APRT), catalyzes AMP formation from adenine 3 and 5-phospho-α-d-ribose-1-diphosphate (PRPP) 5. However, the catalytic efficiency of NucV was much slower than its homolog APRT involved in the biosynthesis of canonical purine nucleoside in the same strain. These results provide new insights in nucleocidin biosynthesis and could guide future research on organofluorine formation.
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http://dx.doi.org/10.1039/d0ra10878b | DOI Listing |
Chembiochem
March 2023
School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK.
The gene cluster in Streptomyces calvus associated with the biosynthesis of the fluoro- and sulfamyl-metabolite nucleocidin was interrogated by systematic gene knockouts. Out of the 26 gene deletions, most did not affect fluorometabolite production, nine abolished sulfamylation but not fluorination, and three precluded fluorination, but had no effect on sulfamylation. In addition to nucI, nucG, nucJ, nucK, nucL, nucN, nucO, nucQ and nucP, we identified two genes (nucW nucA), belonging to a phosphoadenosine phosphosulfate (PAPS) gene cluster, as required for sulfamyl assembly.
View Article and Find Full Text PDFACS Chem Biol
December 2022
Department of Chemistry, Queen's University, Kingston, K7L 3N6 Ontario, Canada.
A genome mining approach was used to identify a hybrid tubercidin-nucleocidin biosynthetic gene cluster (BGC) in sp. AVP053U2. Analysis of culture extracts by liquid chromatography-mass spectrometry revealed the presence of a glucosylated tubercidin derivative.
View Article and Find Full Text PDFChembiochem
August 2022
Department of Chemistry, Queen's University, 90 Bader Ln, Kingston, ON K7L 2S8, Canada.
Nucleocidin is an adenosine derivative containing 4'-fluoro and 5'-O-sulfamoyl substituents. In this study, nucleocidin biosynthesis is examined in two newly discovered producers, Streptomyces virens B-24331 and Streptomyces aureorectus B-24301, which produce nucleocidin and related derivatives at titers 30-fold greater than S. calvus.
View Article and Find Full Text PDFOrg Biomol Chem
December 2021
School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9ST, UK.
Genome homology and the presence of a putative biosynthetic gene cluster identified DSM 41692 and DSM 41465 as candidate producers of the antibiotic nucleocidin 1. Indeed when these bacterial strains were cultured in a medium supplemented with fluoride (4 mM) they each produced nucleocidin 1 and the previously identified 4'-fluoro-3'--β-glucosylated adenosine 2 and its sulfamylated derivative 3. In both of these cases 4'-fluoroadenosine 9 is also identified as a natural product although it has never been observed during fermentations of , the original source of nucleocidin 1.
View Article and Find Full Text PDFRSC Adv
January 2021
School of Chemistry, Institute of Science, Suranaree University of Technology Nakhon Ratchasima 30000 Thailand
Nucleocidin 1 produced by is one of five characterized natural products containing fluorine. It was discovered in 1956, but its biosynthesis is not yet completely resolved. Recently, the biosynthetic gene cluster of 1 was identified.
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