Metagenome-Assembled Genomes From Microbiome Provide Insights Into the Potential Metabolic Functions to the Seaweed.

Front Microbiol

Key Laboratory of Utilization and Conservation of Tropical Marine Bioresource (Ministry of Education), College of Fisheries and Life Sciences, Hainan Tropical Ocean University, Sanya, China.

Published: March 2022

is an economically important edible red alga worldwide. The aquaculture industry and production have grown considerably in recent decades. Microbial communities inhabit the algal surface and produce a variety of compounds that can influence host adaptation. Previous studies on the microbiome were focused on the microbial components or the function of specific microbial lineages, which frequently exclude metabolic information and contained only a small fraction of the overall community. Here, we performed a genome-centric analysis to study the metabolic potential of the phycosphere bacteria. We reconstructed 202 unique metagenome-assembled genomes (MAGs) comprising all major taxa present within the microbiome. The addition of MAGs to the genome tree containing all publicly available -associated microorganisms increased the phylogenetic diversity by 50% within the bacteria. Metabolic reconstruction of the MAGs showed functional redundancy across taxa for pathways including nitrate reduction, taurine metabolism, organophosphorus, and 1-aminocyclopropane-1-carboxylate degradation, auxin, and vitamin B synthesis. Some microbial functions, such as auxin and vitamin B synthesis, that were previously assigned to a few -associated microorganisms were distributed across the diverse epiphytic taxa. Other metabolic pathways, such as ammonia oxidation, denitrification, and sulfide oxidation, were confined to specific keystone taxa.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8984609PMC
http://dx.doi.org/10.3389/fmicb.2022.857901DOI Listing

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