Purpose: The customary approach to early-phase clinical trial design, where the focus is on identification of the maximum tolerated dose, is not always suitable for noncytotoxic or other targeted therapies. Many trials have continued to follow the 3 + 3 dose-escalation design, but with the addition of phase I dose-expansion cohorts to further characterize safety and assess efficacy. Dose-expansion cohorts are not always planned in advance nor rigorously designed. We introduce an approach to the design of phase I expansion cohorts on the basis of sequential predictive probability monitoring.
Methods: Two optimization criteria are proposed that allow investigators to stop for futility to preserve limited resources while maintaining traditional control of type I and type II errors. We demonstrate the use of these designs through simulation, and we elucidate their implementation with a redesign of the phase I expansion cohort for atezolizumab in metastatic urothelial carcinoma.
Results: A sequential predictive probability design outperforms Simon's two-stage designs and posterior probability monitoring with respect to both proposed optimization criteria. The Bayesian sequential predictive probability design yields increased power while significantly reducing the average sample size under the null hypothesis in the context of the case study, whereas the original study design yields too low type I error and power. The optimal efficiency design tended to have more desirable properties, subject to constraints on type I error and power, compared with the optimal accuracy design.
Conclusion: The optimal efficiency design allows investigators to preserve limited financial resources and to maintain ethical standards by halting potentially large dose-expansion cohorts early in the absence of promising efficacy results, while maintaining traditional control of type I and II error rates.
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http://dx.doi.org/10.1200/PO.21.00390 | DOI Listing |
Bull Math Biol
December 2024
Centre for Data Science, Queensland University of Technology, Brisbane, 4000, Australia.
Quantitative population modelling is an invaluable tool for identifying the cascading effects of conservation on an ecosystem. When population data from monitoring programs is not available, deterministic ecosystem models have often been calibrated using the theoretical assumption that ecosystems have a stable, coexisting equilibrium. However, a growing body of literature suggests these theoretical assumptions are inappropriate for conservation contexts.
View Article and Find Full Text PDFSci Rep
December 2024
The University of Trans-Disciplinary Health Sciences and Technology (TDU), 74/2, Post Attur via Yelahanka, Jarakabande Kaval, Bengaluru, 560 064, India.
Triphala is a traditional Ayurvedic herbal formulation composed of three fruits: amla (Phyllanthus emblica), bibhitaki (Terminalia bellerica), and haritaki (Terminalia chebula). Triphala is a potent Ayurvedic remedy that promotes digestion, detoxification, and overall wellness, while also providing antioxidant benefits through its trio of nutrient-rich fruits. In order to elucidate the individual contributions of the three ingredients of Triphala from molecular perspective, the individual ingredients were used for the untargeted LCMS/MS analysis.
View Article and Find Full Text PDFSci Rep
December 2024
Department of Computing and Information Systems, Sunway University, 47500, Petaling Jaya, Selangor Darul Ehsan, Malaysia.
Urban mobility prediction is crucial for optimizing resource allocation, managing transportation systems, and planning urban development. We propose a novel framework, GeoTemporal LSTM (GT-LSTM), designed to address the intricate spatiotemporal dynamics of urban environments. GT-LSTM integrates temporal dependencies with geographic information through a multi-modal approach that combines attention mechanisms and Recurrent Neural Networks (RNNs).
View Article and Find Full Text PDFFuture Oncol
December 2024
Department of Thoracic Oncology, National Cancer Center Hospital East, Kashiwa, Japan.
Aims: This study aimed at developing a scoring system (EAST score) to predict recurrence after chemoradiotherapy in limited-stage small-cell lung cancer (LS-SCLC).
Patients & Methods: Treatment-naïve LS-SCLC patients receiving concurrent chemoradiotherapy (CCRT) ( = 234) or sequential chemoradiotherapy ( = 53) were retrospectively reviewed. Using data from CCRT population, clinical and radiological variables associated with disease progression were identified.
J Cheminform
December 2024
School of Biomedical Engineering and Informatics, Nanjing Medical University, Longmian Avenue No. 101, Nanjing, 211166, Jiangsu, China.
Predicting protein-ligand binding affinity is essential for understanding protein-ligand interactions and advancing drug discovery. Recent research has demonstrated the advantages of sequence-based models and graph-based models. In this study, we present a novel hybrid multimodal approach, DeepTGIN, which integrates transformers and graph isomorphism networks to predict protein-ligand binding affinity.
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