Anatomical and physiological specializations for plant adaptation to harsh climates result from molecular mechanisms that can be encoded in the nucleus or organelle. In this study, the complete plastomes of an arctic species, Bunge (Fabaceae), and a closely related temperate species, Douglas ex Hook., were assembled, annotated, and analyzed to identify differences that might help explain their adaptation to different environments. This is consistent with the previously sequenced DC. and plastomes, and plastomes both have the common features of the inverted repeat-lacking clade (IRLC), as well as F intron loss, which is unique to the genus. However, significant differences were observed between the plastomes of and and other closely related species ( spp. and spp.), including a 3 kb inversion, two large insertions (>1 kb), significant modifications of the gene, and an overall larger size.
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http://dx.doi.org/10.1139/gen-2021-0059 | DOI Listing |
Mitochondrial DNA B Resour
September 2024
Key Laboratory for Specialty Agricultural Germplasm Resources Development and Utilization of Guizhou Province, Liupanshui Normal University, Liupanshui, China.
L. var. (Nakai) Nakai 1918 is a dwarf shrub that mainly grow in alpine and arctic zones of the Northern Hemisphere, representing an endemic variety in Asia.
View Article and Find Full Text PDFNat Plants
June 2023
Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.
Improving the carboxylation properties of Rubisco has primarily arisen from unforeseen amino acid substitutions remote from the catalytic site. The unpredictability has frustrated rational design efforts to enhance plant Rubisco towards the prized growth-enhancing carboxylation properties of red algae Griffithsia monilis GmRubisco. To address this, we determined the crystal structure of GmRubisco to 1.
View Article and Find Full Text PDFNat Commun
May 2022
Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, FR-38000, Grenoble, France.
There is still limited consensus on the evolutionary history of species-rich temperate alpine floras due to a lack of comparable and high-quality phylogenetic data covering multiple plant lineages. Here we reconstructed when and how European alpine plant lineages diversified, i.e.
View Article and Find Full Text PDFGenome
May 2022
Department of Plant Science, McGill University, Macdonald Campus, Sainte-Anne-de-Bellevue, QC H9X 3V9, Canada.
Anatomical and physiological specializations for plant adaptation to harsh climates result from molecular mechanisms that can be encoded in the nucleus or organelle. In this study, the complete plastomes of an arctic species, Bunge (Fabaceae), and a closely related temperate species, Douglas ex Hook., were assembled, annotated, and analyzed to identify differences that might help explain their adaptation to different environments.
View Article and Find Full Text PDFMol Ecol Resour
July 2022
LECA, Laboratoire d'Ecologie Alpine (LECA), Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, Grenoble, France.
Low-coverage whole genome shotgun sequencing (or genome skimming) has emerged as a cost-effective method for acquiring genomic data in nonmodel organisms. This method provides sequence information on chloroplast genome (cpDNA), mitochondrial genome (mtDNA) and nuclear ribosomal regions (rDNA), which are over-represented within cells. However, numerous bioinformatic challenges remain to accurately and rapidly obtain such data in organisms with complex genomic structures and rearrangements, in particular for mtDNA in plants or for cpDNA in some plant families.
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