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Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing.
Int J Mol Sci
September 2023
Biocomputing Unit, National Centre for Biotechnology (CNB CSIC), Campus Universidad Autónoma de Madrid, Darwin 3, Cantoblanco, 28049 Madrid, Spain.
Article Synopsis
- Macromolecular assemblies, like protein complexes, constantly change their structure, which is vital for their function, and can be studied using methods like elastic network model normal mode analysis and principal component analysis.
- These methods are mainly used by experienced programmers, posing a challenge for less technical users to access comprehensive data analysis tools in molecular dynamics studies.
- To bridge this gap, the ProDy Python API has been integrated into the Scipion workflow engine, allowing a broader audience to utilize enhanced protocols and pipelines for analyzing macromolecular dynamics alongside other software for cryo-electron microscopy and molecular simulations.
A Wide-Bandwidth PVT-Reconfigurable CMOS Power Amplifier with an Integrated Tunable-Output Impedance Matching Network.
Micromachines (Basel)
February 2023
Department of Electrical and Electronics Engineering, Istanbul University, 34320 Istanbul, Turkey.
This paper proposes a wideband CMOS power amplifier (PA) with integrated digitally assisted wideband pre-distorter (DAWPD) and a transformer-integrated tunable-output impedance matching network. As a continuation of our previous research, which focused only on linearization tuning for wideband and PVT, this work emphasized improving the maximum output power, gain and PAE across the PVT variations while maintaining the linearity for a wide frequency bandwidth of 1 GHz. The DAWPD is employed at the driver stage to realize a pre-distorting characteristic for wideband linearization.
View Article and Find Full Text PDFShapeshifting in the Venus flytrap (): Morphological and biomechanical adaptations and the potential costs of a failed hunting cycle.
Front Plant Sci
September 2022
Botanical Garden, Department of Biology, Technical University of Darmstadt, Darmstadt, Germany.
The evolutionary roots of carnivory in the Venus flytrap () stem from a defense response to plant injury caused by, e.g., herbivores.
View Article and Find Full Text PDFReconfiguring Darwin's abominable mystery.
Nat Plants
March 2022
Royal Botanic Gardens Kew, Richmond, UK.
Monitoring one-carbon metabolism by mass spectrometry to assess liver function and disease.
J Physiol Biochem
February 2022
Functional Proteomics Laboratory, Centro Nacional de Biotecnología-CSIC, Proteored-ISCIII, Darwin 3, 28049, Madrid, Spain.
Precision medicine promises to overcome the constraints of the traditional "one-for-all" healthcare approach through a clear understanding of the molecular features of a disease, allowing for innovative and tailored treatments. State-of-the-art proteomics has the potential to accurately explore the human proteome to identify, quantify, and characterize proteins associated with disease progression. There is a pressing need for informative biomarkers to diagnose liver disease early in its course to prevent severe disease for which no efficient treatment is yet available.
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