Rye ( L.) is one of the most important cereal crops cultivated in the world due to its ability to produce high yields even when grown under environmental stress conditions. About 27,000 accessions have been collected and preserved in 70 gene banks worldwide. Although the germplasm represents a great source of genetic diversity, the molecular characteristics refers only to the part of them. Here, we present data obtained by the Simple Sequence Repeat markers (SSR) analysis of 100 rye accessions preserved in the gene bank of the Polish Academy of Sciences Botanical Garden - Center for Biological Diversity Conservation in Powsin. Additionally, the data presented in this article refers to evaluation of agronomoic traits and weather conditions measured for 14 years. The data was used in the research article "Investigation of obsolete diversity of rye ( L.) using multiplexed SSR fingerprinting and evaluation of agronomic traits" [1].
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http://dx.doi.org/10.1016/j.dib.2022.107910 | DOI Listing |
Plants (Basel)
December 2024
Plant Sciences Unit, ILVO (Flanders Research Institute for Agriculture, Fisheries and Food), Caritasstraat 39, 9090 Melle, Belgium.
Quinoa () cultivation has become increasingly popular in NW Europe but little is known about the performance of contract-free varieties in this region. In this study, we phenotyped 25 quinoa varieties on a single-plant basis in a field trial in Belgium. In addition, we optimized breeding tools such as NIRS (near-infrared reflectance spectroscopy) to estimate the seed crude protein content and a multiplex PCR set to identify true F progeny from pair crosses.
View Article and Find Full Text PDFAnimals (Basel)
November 2024
Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai 201306, China.
Plants (Basel)
July 2024
CREA-Research Center for Viticulture and Enology, 31015 Conegliano, Italy.
Plant breeders utilize marker-assisted selection (MAS) to identify favorable or unfavorable alleles in seedlings early. In this task, they need methods that provide maximum information with minimal input of time and economic resources. Grape breeding aimed at producing cultivars resistant to pathogens employs several resistance loci (, , and ) that are ideal for implementing MAS.
View Article and Find Full Text PDFbioRxiv
February 2024
Department of Genome Sciences, University of Washington, Seattle, WA, USA.
The functional consequences of structural variants (SVs) in mammalian genomes are challenging to study. This is due to several factors, including: 1) their numerical paucity relative to other forms of standing genetic variation such as single nucleotide variants (SNVs) and short insertions or deletions (indels); 2) the fact that a single SV can involve and potentially impact the function of more than one gene and/or regulatory element; and 3) the relative immaturity of methods to generate and map SVs, either randomly or in targeted fashion, in or model systems. Towards addressing these challenges, we developed , a straightforward method that enables the multiplex generation and mapping of several major forms of SVs (deletions, inversions, translocations) throughout a mammalian genome.
View Article and Find Full Text PDFSci Rep
November 2023
National Center for Traditional Chinese Medicine Inheritance and Innovation, Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, China.
Zanthoxylum nitidum (Roxb.) is a commonly used traditional Chinese medicine. However, the collection and protection of wild germplasm resources of Z.
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