Following the seminal theoretical work on the pleated β-sheet published by Pauling and Corey in 1951, the rippled β-sheet was hypothesized by the same authors in 1953. In the pleated β-sheet the interacting β-strands have the same chirality, whereas in the rippled β-sheet the interacting β-strands are mirror-images. Unlike with the pleated β-sheet that is now common textbook knowledge, the rippled β-sheet has been much slower to evolve. Much of the experimental work on rippled sheets came from groups that study aggregating racemic peptide systems over the course of the past decade. This includes MAX1/DMAX hydrogels (Schneider), L/D-KFE8 aggregating systems (Nilsson), and racemic Amyloid β mixtures (Raskatov). Whether a racemic peptide mixture is "ripple-genic" (, whether it forms a rippled sheet) or "pleat-genic" (, whether it forms a pleated sheet) is likely governed by a complex interplay of thermodynamic and kinetic effects. Structural insights into rippled sheets remain limited to only a very few studies that combined sparse experimental structural constraints with molecular modeling. Crystal structures of rippled sheets are needed so we can rationally design rippled sheet architectures. Here we report a high-resolution crystal structure, in which (l,l,l)-triphenylalanine and (d,d,d)-triphenylalanine form dimeric antiparallel rippled sheets, which pack into herringbone layer structures. The arrangements of the tripeptides and their mirror-images in the individual dimers were in excellent agreement with the theoretical predictions by Pauling and Corey. A subsequent mining of the PDB identified three orphaned rippled sheets among racemic protein crystal structures.
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http://dx.doi.org/10.1039/d1sc05731f | DOI Listing |
An Acad Bras Cienc
November 2024
Rio de Janeiro State University/LARAMG, Pavilhão Haroldo L. Cunha, Subsolo, Rua São Francisco Xavier, 524, Maracanã, 20550-013 Rio de Janeiro, RJ, Brazil.
The Hunga Tonga-Hunga/Hunga-Ha'apai eruption on January 15, 2022 sent off a plume of ash material up to the stratosphere and triggered a meteotsunami and barometric pressure pulse that rippled through the atmosphere and oceans all around the world. The nature of the volcanic event and its global impacts on the oceans, atmosphere, lithosphere and the cryosphere are a matter of debate. Here we present a first overview of the time travel of the sound atmospheric pressure wave through the Antarctic continent based on in situ measurements, which represented a unique event observed through the polar ice sheet during the instrumental meteorological era.
View Article and Find Full Text PDFACS Appl Mater Interfaces
November 2024
School of Physics Science and Engineering, Tongji University, Shanghai 200092, China.
Nanomaterials (Basel)
October 2024
School of Physics, East China University of Science and Technology, Shanghai 200237, China.
Ripples on graphene play a crucial role in manipulating its physical and chemical properties. However, producing ripples, especially at the nanoscale, remains challenging with current experimental methods. In this study, we report that tiny ripples in graphene can be generated by the adsorption of a single metal cation (Na, K, Mg, Ca, Cu, Fe) onto a graphene sheet, based on the density functional theory calculations.
View Article and Find Full Text PDFPhys Med Biol
July 2024
Institute for Quantum Medical Science, National Institutes for Quantum Science and Technology, Chiba 263-8555, Japan.
A simple, low-cost ripple filter consisting of multiple mesh sheets (mRiFi) was previously developed to reproducibly widen the Bragg peak of heavy-ion beams. To fabricate the mRiFi, the mRiFi parameters such as the wire material, wire diameter, wire spacing, and number of mesh sheets had to be determined. However, it was unclear how these parameters contribute to shifting and widening of the Bragg peak as well as to lateral spreading of the beam passing through the mRiFi.
View Article and Find Full Text PDFJ Phys Chem Lett
May 2024
Materials and Process Simulation Center, California Institute of Technology, Pasadena, California 91125, United States.
Pauling and Corey expected that a racemic mixture would result in a rippled β-sheet, however, it has been known from experiments that the racemic mixtures of triphenylalanine lead to a herringbone structure. Because of the theoretical limitations concerning crystal structures such as rippled β-sheet, it is inevitable to understand how the interplay of the amino acids prefers a specific structural motif. In this paper we use molecular dynamics to understand the sequence- and enantiomer-dependent structures by comparisons between rippled β-sheet and pleated β-sheet, solvated and anhydrous rippled β-sheet, and rippled β-sheet and the herringbone structure, based on thermodynamics and structures at the atomic level.
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