We review the contact-based description of aggregation of intrinsically disordered proteins in coarse-grained and all-atom models. We consider polyglutamines and polyalanines at various concentrations of the peptides. We also study associations of two chains of α-synuclein and up to 20 chains of a 12-residue-long segment of protein tau. We demonstrate that the total number of two-chain association events (in an aggregate that comprises at least two chains) provides a useful measure of the propensity to aggregate. This measure is consistent, for instance, with the previously reported mass spectroscopy data. The distribution of the number of association events is given essentially by a power law as a function of the duration of these events. The corresponding exponent depends on the protein and the temperature but not on the concentration of the proteins.
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http://dx.doi.org/10.1007/978-1-0716-1546-1_6 | DOI Listing |
Sci Rep
January 2025
Department of Computer Science, Xi'an University of Architecture and Technology, Xi'an, 710055, Shaanxi Province, China.
The attention mechanism has significantly progressed in various point cloud tasks. Benefiting from its significant competence in capturing long-range dependencies, research in point cloud completion has achieved promising results. However, the typically disordered point cloud data features complicated non-Euclidean geometric structures and exhibits unpredictable behavior.
View Article and Find Full Text PDFBiomater Transl
November 2024
Cardiac Regeneration and Ageing Lab, School of Medicine, Shanghai University, Shanghai, China.
Cardiovascular diseases cause significant morbidity and mortality worldwide. Engineered cardiac organoids are being developed and used to replicate cardiac tissues supporting cardiac morphogenesis and development. These organoids have applications in drug screening, cardiac disease models and regenerative medicine.
View Article and Find Full Text PDFJ Chem Inf Model
January 2025
Department of Chemistry, Faculty of Science, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada.
Tau is a microtubule (MT)-associated protein that binds to and stabilizes the MTs of neurons. Due to its intrinsically disordered nature, it undergoes several post-translational modifications (PTMs) that are intricately linked to both the physiological and pathophysiological roles of Tau. Prior research has shown phosphorylation and O-GlcNAcylation to have contrasting effects on Tau aggregation; however, the precise molecular mechanisms and potential synergistic effects of these modifications remain elusive.
View Article and Find Full Text PDFJ Mol Cell Cardiol
January 2025
Department of Physiology, University of Kentucky, Lexington, KY, USA; Department of Internal Medicine, University of Kentucky, Lexington, KY, USA. Electronic address:
Cardiologists have analyzed daily patterns in the incidence of sudden cardiac death to identify environmental, behavioral, and physiological factors that trigger fatal arrhythmias. Recent studies have indicated an overall increase in sudden cardiac arrest during daytime hours when the frequency of arrhythmogenic triggers is highest. The risk of fatal arrhythmias arises from the interaction between these triggers-such as elevated sympathetic signaling, catecholamine levels, heart rate, afterload, and platelet aggregation-and the heart's susceptibility (myocardial substrate) to them.
View Article and Find Full Text PDFNeural Netw
January 2025
School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, 430070, Hubei, China.
In the Imbalanced Multivariate Time Series Classification (ImMTSC) task, minority-class instances typically correspond to critical events, such as system faults in power grids or abnormal health occurrences in medical monitoring. Despite being rare and random, these events are highly significant. The dynamic spatial-temporal relationships between minority-class instances and other instances make them more prone to interference from neighboring instances during classification.
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