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Molecular mechanism of vivipary as revealed by the genomes of viviparous mangroves and non-viviparous relatives.
Curr Biol
August 2024
Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen 361102, Fujian, China. Electronic address:
Vivipary is a prominent feature of mangroves, allowing seeds to complete germination while attached to the mother plant, and equips propagules to endure and flourish in challenging coastal intertidal wetlands. However, vivipary-associated genetic mechanisms remain largely elusive. Genomes of two viviparous mangrove species and a non-viviparous inland relative were sequenced and assembled at the chromosome level.
View Article and Find Full Text PDFGenome-wide high-throughput chromosome conformation capture analysis reveals hierarchical chromatin interactions during early somatic embryogenesis.
Plant Physiol
August 2023
Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China.
Somatic embryogenesis (SE), like zygotic embryo development, is a progressive process. Early SE is the beginning of a switch from a somatic to an embryogenic state and is an important stage for initiating chromatin reprogramming of SE. Previous studies suggest that changes in chromatin accessibility occur during early SE, although information on the 3D structure of chromatin is not yet available.
View Article and Find Full Text PDFChromosomal-level genome and multi-omics dataset provides new insights into leaf pigmentation in Acer palmatum.
Int J Biol Macromol
February 2023
Institute of Agricultural Engineering, Anhui Academy of Agricultural Sciences, Hefei 230031, China. Electronic address:
Acer palmatum (A. palmatum), a deciduous shrub or small arbour which belongs to Acer of Aceraceae, is an excellent greening species as well as a beautiful ornamental plant. In this study, a high-quality chromosome-level reference genome for A.
View Article and Find Full Text PDFChromosome-Level Genome Assembly for and Highlights to Mechanisms for Leaf Color and Shape Change.
Front Plant Sci
March 2022
College of Forestry and Grassland, Jilin Agricultural University, Changchun, China.
(Pax) Komarov is an ornamental plant with prominent potential and is naturally distributed in Northeast China. Here, we obtained a chromosome-scale genome assembly of combining HiFi and Hi-C data, and the final assembled genome size was 690.24 Mb and consisted of 287 contigs, with a contig N50 value of 5.
View Article and Find Full Text PDFThe chromosome-level rambutan genome reveals a significant role of segmental duplication in the expansion of resistance genes.
Hortic Res
February 2022
Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA.
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