PECD study of a single-conformer molecule: a critical comparison of experiment and theory.

Phys Chem Chem Phys

Istituto Struttura della Materia-CNR (ISM-CNR), Via del Fosso del Cavaliere 100, 00133, Roma, Italy.

Published: February 2022

AI Article Synopsis

  • The study examines how the conformational population affects photoelectron circular dichroism (PECD) spectroscopy, which has provided deep insights into molecular processes and geometries.
  • The research highlights the significant role of methyl group rotations in influencing the PECD signal, linking theoretical predictions with experimental observations.
  • Using norcamphor as a benchmark, the work achieves strong alignment between experimental results and theory, enhancing understanding of how molecular rotations impact PECD, particularly in comparison to camphor.

Article Abstract

In this work we address a specific experimental and theoretical question regarding the influence of a conformational population in the modeling of photoelectron circular dichroism (PECD) spectroscopy. In the past two decades, PECD has revealed a rich and complex phenomenology in molecular processes with unprecedented insight, especially in molecular geometry sensitivity. Since the early development of this spectroscopy, theory has pointed out the importance of conformer influence on PECD; in particular, the rotation of methyl groups was surprisingly found to be responsible for strong modulation of the PECD signal. Here, to advance understanding of the effect of rotations, we have chosen to study norcamphor, a single-conformer molecule, as a benchmark for a PECD comparison between experiment and theory at the density functional theory (DFT) and time-dependent density functional theory (TDDFT) levels. The excellent agreement between experimental data and theory for norcamphor sheds light on the influence of rotations and gives a solid explanation for the reasonable qualitative agreement in the PECD of camphor, where three methyl groups are added to the same molecular structure.

Download full-text PDF

Source
http://dx.doi.org/10.1039/d1cp05416cDOI Listing

Publication Analysis

Top Keywords

single-conformer molecule
8
comparison experiment
8
experiment theory
8
methyl groups
8
density functional
8
functional theory
8
pecd
7
theory
6
pecd study
4
study single-conformer
4

Similar Publications

Chiral amines and amino alcohols form an important category of molecules employed in the designing of new drugs and catalyst. Herein, we present a helically-twisted stereodynamic dialdehyde probe 1 for the determining of absolute configuration, and enantiomeric excess of chiral amine and amino alcohols. Probe 1 is based on the pyridine-2,6-dicarboxamide (PDC) core and undergoes rapid interconversion between the P- and M- conformers.

View Article and Find Full Text PDF

Vacuum-ultraviolet (VUV) absorption spectroscopy enables electronic transitions that offer the unambiguous identification of molecules. As target molecules become more complex, multifunctional species present a great challenge to both experimental and computational spectroscopy. This research reports both experimental and theoretical studies of oxiranes.

View Article and Find Full Text PDF

Herein, we have investigated the effect of microhydration on the secondary structure of a capped dipeptide Boc-DPro-Gly-NHBn-OMe (Boc = tert-butyloxycarbonyl, Bn = Benzyl), i.e., Pro-Gly (PG) with a single H2O molecule using gas-phase laser spectroscopy combined with quantum chemistry calculations.

View Article and Find Full Text PDF

Small molecule ligands exhibit a diverse range of conformations in solution. Upon binding to a target protein, this conformational diversity is generally reduced. However, ligands can retain some degree of conformational flexibility even when bound to a receptor.

View Article and Find Full Text PDF

The engineering of novel protein-ligand binding interactions, particularly for complex drug-like molecules, is an unsolved problem, which could enable many practical applications of protein biosensors. In this work, we analyzed two engineered biosensors, derived from the plant hormone sensor PYR1, to recognize either the agrochemical mandipropamid or the synthetic cannabinoid WIN55,212-2. Using a combination of quantitative deep mutational scanning experiments and molecular dynamics simulations, we demonstrated that mutations at common positions can promote protein-ligand shape complementarity and revealed prominent differences in the electrostatic networks needed to complement diverse ligands.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!