Agar plate assay for rapid screening of aryl-alcohol oxidase mutant libraries in Pichia pastoris.

J Biotechnol

Institute of Biochemistry, Heinrich-Heine University Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany. Electronic address:

Published: February 2022

Directed evolution is a powerful tool for developing biocatalysts with tailor-made properties for biocatalytic applications. High-throughput activity screening of large mutant libraries generated by e.g. means of directed evolution is usually performed in 96-well microtiter plates requiring, however, time-consuming and laborious enzyme expression, cell harvesting and activity measurements. In addition, automated liquid handling systems are needed to cope with the high number of colonies to be screened. Herein, we developed an agar plate-based assay for simple and fast screening of HO-producing aryl-alcohol oxidase (AAO) mutant libraries in Pichia pastoris. Buffered minimal methanol agar plates were supplemented with 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), horseradish peroxidase (HRP) and the target substrate. AAO activity is visualized by formation of green zones around AAO-secreting P. pastoris colonies due to ABTS oxidation by HRP which is fueled with HO by AAO in course of substrate oxidation. Colonies were screened within 24 h for AAO activity using different AAO substrates like veratryl alcohol, p-anisyl alcohol or trans,trans-2,4-hexadien-1-ol and even low AAO activity towards 5-hydroxymethylfurfural could be detected within 48 h. The developed agar plate-based assay can be extended to other substrates and might also be applied for fast and substrate-specific screening of other HO-producing oxidases in P. pastoris.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jbiotec.2022.01.006DOI Listing

Publication Analysis

Top Keywords

mutant libraries
12
aao activity
12
aryl-alcohol oxidase
8
libraries pichia
8
pichia pastoris
8
directed evolution
8
colonies screened
8
developed agar
8
agar plate-based
8
plate-based assay
8

Similar Publications

A Series of Novel Alleles of Modulating Heading and Salt Tolerance in Rice.

Plants (Basel)

January 2025

State Key Laboratory of Rice Biology and Breeding, China National Center for Rice Improvement, China National Rice Research Institute, Hangzhou 311400, China.

Rice ( L.) is a staple crop for nearly half of the global population and one of China's most extensively cultivated cereals. Heading date, a critical agronomic trait, determines the regional and seasonal adaptability of rice varieties.

View Article and Find Full Text PDF

Recent Advances in Antimicrobial Resistance: Insights from as a Model Organism.

Microorganisms

December 2024

Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China.

Antimicrobial resistance (AMR) represents a critical global health threat, and a thorough understanding of resistance mechanisms in is needed to guide effective treatment interventions. This review explores recent advances for investigating AMR in , including machine learning for resistance pattern analysis, laboratory evolution to generate resistant mutants, mutant library construction, and genome sequencing for in-depth characterization. Key resistance mechanisms are discussed, including drug inactivation, target modification, altered transport, and metabolic adaptation.

View Article and Find Full Text PDF

[Transaminases: high-throughput screening a ketone-fluorescent probe and applications].

Sheng Wu Gong Cheng Xue Bao

January 2025

College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, Zhejiang, China.

Transaminases are a class of enzymes that catalyze the transfer of amino between amino acids and keto acids, playing an important role in the biosynthesis of organic amines and the corresponding derivatives. However, natural enzymes often have low catalytic efficiency against non-natural substrates, which limits their widespread applications. Enzyme engineering serves as an effective approach to improve the catalytic properties and thereby expand the application scope of transaminases.

View Article and Find Full Text PDF

[Directed evolution improves the catalytic activity of laccase in papermaking].

Sheng Wu Gong Cheng Xue Bao

January 2025

State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan 430062, Hubei, China.

As a biocatalyst, laccase has been widely studied and applied in the papermaking industry. However, the low catalytic efficiency and poor stability of natural laccase limit its application in the pulping process. To develop the laccase with high activity and strong tolerance, we carried out directed evolution for modification of the laccase derived from and screened out the mutants F282L/F306L and Q275P from the random mutant library by high-throughput screening.

View Article and Find Full Text PDF

, the grey mould fungus affecting over 1400 plant species, employs infection cushion (IC), a branched and claw-like structure formed by mycelia, as a critical strategy to breach host surface barriers. However, the molecular mechanisms underlying IC formation remain largely unexplored. In this study, we utilized a forward genetics approach to establish a large T-DNA tagged population of , which contained 14,000 transformants.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!