Transport characteristics of DNA-tagged silica colloids as a colloidal tracer in saturated sand columns; role of solution chemistry, flow velocity, and sand grain size.

J Contam Hydrol

Department of Water Management, Faculty of Civil Engineering and Geosciences, Delft University of Technology, Delft, the Netherlands; Department of Water Resources and Ecosystems, IHE-Delft Institute for Water Education, Delft, the Netherlands. Electronic address:

Published: April 2022

In recent years, DNA-tagged silica colloids have been used as an environmental tracer. A major advantage of this technique is that the DNA-coding provides an unlimited number of unique tracers without a background concentration. However, little is known about the effects of physio-chemical subsurface properties on the transport behavior of DNA-tagged silica tracers. We are the first to explore the deposition kinetics of this new DNA-tagged silica tracer for different pore water chemistries, flow rates, and sand grain size distributions in a series of saturated sand column experiments in order to predict environmental conditions for which the DNA-tagged silica tracer can best be employed. Our results indicated that the transport of DNA-tagged silica tracer can be well described by first order kinetic attachment and detachment. Because of massive re-entrainment under transient chemistry conditions, we inferred that attachment was primarily in the secondary energy minimum. Based on calculated sticking efficiencies of the DNA-tagged silica tracer to the sand grains, we concluded that a large fraction of the DNA-tagged silica tracer colliding with the sand grain surface did also stick to that surface, when the ionic strength of the system was higher. The experimental results revealed the sensitivity of DNA-tagged silica tracer to both physical and chemical factors. This reduces its applicability as a conservative hydrological tracer for studying subsurface flow paths. Based on our experiments, the DNA-tagged silica tracer is best applicable for studying flow routes and travel times in coarse grained aquifers, with a relatively high flow rate. DNA-tagged silica tracers may also be applied for simulating the transport of engineered or biological colloidal pollution, such as microplastics and pathogens.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jconhyd.2022.103954DOI Listing

Publication Analysis

Top Keywords

dna-tagged silica
44
silica tracer
28
sand grain
12
dna-tagged
11
silica
11
tracer
10
silica colloids
8
saturated sand
8
grain size
8
silica tracers
8

Similar Publications

Quantifying aquifer heterogeneity using superparamagnetic DNA particles.

J Contam Hydrol

January 2025

Environmental Hydrogeology Group, Department of Earth Sciences, Utrecht University, Princetonlaan 8a, 3584 CB Utrecht, the Netherlands; Department of Statistics, Informatics and Modelling, National Institute of Public Health and the Environment, P.O. Box 1, 3720 BA Bilthoven, the Netherlands.

Identifying and determining hydraulic parameters of physically heterogeneous aquifers is pivotal for flow field analysis, contaminant migration and risk assessment. In this research, we applied a novel uniquely sequenced DNA tagged superparamagnetic silica microparticles (SiDNAmag) to quantify hydraulic parameters and associated uncertainties of a heterogeneous sand tank. In the sand tank with lens shaped heterogeneity, we conducted three sets of multi - point injection experiments in unconsolidated (1) homogeneous (zone 0), (2) heterogeneous with a no-conductivity-zone (zone 1), and (3) heterogeneous with a high-conductive-zone (zone 2).

View Article and Find Full Text PDF

Dispersion of silica-encapsulated DNA magnetic particles in a homogeneous sand tank.

J Contam Hydrol

September 2024

Environmental Hydrogeology Group, Department of Earth Sciences, Utrecht University, Princetonlaan 8a, 3584 CB Utrecht, the Netherlands; Department of Statistics, Informatics and Modelling, National Institute of Public Health and the Environment, P.O. Box 1, 3720 BA Bilthoven, the Netherlands.

Article Synopsis
  • The study investigates the three-dimensional dispersion of colloids, specifically focusing on silica-encapsulated DNA-tagged superparamagnetic particles (SiDNAmag) injected into a sand medium.
  • Concentration measurements of SiDNAmag were taken at various locations over time, and the researchers used Monte Carlo modeling to determine dispersivity values and uncertainties, finding similarities with salt tracer data.
  • Results demonstrated that the dispersive behavior of SiDNAmag was comparable to that of salt tracers, suggesting a lack of size exclusion and highlighting the applicability of SiDNAmag for studying dispersion in porous media.
View Article and Find Full Text PDF

Transport characteristics of DNA-tagged silica colloids as a colloidal tracer in saturated sand columns; role of solution chemistry, flow velocity, and sand grain size.

J Contam Hydrol

April 2022

Department of Water Management, Faculty of Civil Engineering and Geosciences, Delft University of Technology, Delft, the Netherlands; Department of Water Resources and Ecosystems, IHE-Delft Institute for Water Education, Delft, the Netherlands. Electronic address:

In recent years, DNA-tagged silica colloids have been used as an environmental tracer. A major advantage of this technique is that the DNA-coding provides an unlimited number of unique tracers without a background concentration. However, little is known about the effects of physio-chemical subsurface properties on the transport behavior of DNA-tagged silica tracers.

View Article and Find Full Text PDF

Transport of silica encapsulated DNA microparticles in controlled instantaneous injection open channel experiments.

J Contam Hydrol

October 2021

Water Resource Section, Department of Civil Engineering and Geoscience, Delft University of Technology, Delft, Netherlands. Electronic address:

Surface water tracing is a widely used technique to investigate in-stream mass transport including contaminant migration. Recently, a microparticle tracer was developed with unique synthetic DNA encapsulated in an environmentally-friendly silica coating (Si-DNA microparticle). Previous tracing applications of such tracers reported detection and quantification, but a massive loss of tracer mass.

View Article and Find Full Text PDF

Environmental tracers are chemical species that move with a fluid and allow us to understand its origin and material transport properties. DNA-based materials have been proposed and used for tracing due to their potential for multitracing with high specificity and sensitivity. For large-scale applications of this new material it is of interest to understand its impact on the environment.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!