Development and Validation of a Tumor Mutation Burden-Related Immune Prognostic Signature for Ovarian Cancers.

Front Genet

Key Laboratory of Environmental Medicine Engineering, Ministry of Education, School of Public Health, Southeast University, Nanjing, China.

Published: January 2022

AI Article Synopsis

  • Ovarian cancer (OC) has a high incidence rate and poor prognosis, and tumor mutation burden (TMB) is becoming an important biomarker for predicting immunotherapy effectiveness.
  • A study found that higher TMB scores in OC patients are linked to better prognoses, and nine key immune prognostic genes were identified to create a TMB-associated immune risk score (TMB-IRS) that effectively predicts patient outcomes.
  • The TMB-IRS is correlated with immune cell infiltration and checkpoint molecules, and can be combined with other clinical features to provide a comprehensive prognosis evaluation for OC patients.

Article Abstract

Ovarian cancer (OC), one of the most common malignancies of the female reproductive system, is characterized by high incidence and poor prognosis. Tumor mutation burden (TMB), as an important biomarker that can represent the degree of tumor mutation, is emerging as a key indicator for predicting the efficacy of tumor immunotherapy. In our study, the gene expression profiles of OC were downloaded from TCGA and GEO databases. Subsequently, we analyzed the prognostic value of TMB in OC and found that a higher TMB score was significantly associated with a better prognosis ( = 0.004). According to the median score of TMB, 9 key TMB related immune prognostic genes were selected by LASSO regression for constructing a TMB associated immune risk score (TMB-IRS) signature, which can effectively predict the prognosis of OC patients (HR = 2.32, 95% CI = 1.68-3.32; AUC = 0.754). Interestingly, TMB-IRS is also closely related to the level of immune cell infiltration and immune checkpoint molecules (PD1, PD-L1, CTLA4, PD-L2) in OC. Furthermore, the nomogram combined with TMB-IRS and a variety of clinicopathological features can more comprehensively evaluate the prognosis of patients. In conclusion, we explored the relationship between TMB and prognosis and validated the TMB-IRS signature based on TMB score in an independent database (HR = 1.60, 95% CI = 1.13-2.27; AUC = 0.639), which may serve as a novel biomarker for predicting OC prognosis as well as possible therapeutic targets.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8787320PMC
http://dx.doi.org/10.3389/fgene.2021.688207DOI Listing

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