Overflow metabolism is a phenomenon extended in nature, ranging from microbial to cancer cells. Accumulation of overflow metabolites pose a challenge for large-scale bioprocesses. Yet, the causes of overflow metabolism are not fully clarified. In this work, the underlying mechanisms, reasons and consequences of overflow metabolism in different organisms have been summarized. The reported effect of aerobic expression of haemoglobin (VHb) in different organisms are revised. The use of VHb to reduce overflow metabolism is proposed and studied through flux balance analysis in at a fixed maximum substrate and oxygen uptake rates. Simulations showed that the presence of VHb increases the growth rate, while decreasing acetate production, in line with the experimental measurements. Therefore, aerobic VHb expression is considered a potential tool to reduce overflow metabolism in cells.
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http://dx.doi.org/10.3390/microorganisms10010043 | DOI Listing |
J Agric Food Chem
December 2024
Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Utilization of microbial hosts to produce natural plant products is regarded as a promising and sustainable approach. However, achieving highly efficient production of terpenoids using microorganisms remains a significant challenge. Here, mevalonate, a building block of terpenoids, was used as a demo product to explore the potential metabolic constraints for terpenoid biosynthesis in .
View Article and Find Full Text PDFJ Phycol
December 2024
Institute for Marine and Antarctic Studies (IMAS), University of Tasmania (UTAS), Battery Point, Tasmania, Australia.
Dissolved organic carbon (DOC) released by macroalgae is an intrinsic component of the coastal ocean carbon cycle, yet knowledge of how future ocean warming may influence this is limited. Temperature is one of the primary abiotic regulators of macroalgal physiology, but there is minimal understanding of how it influences the magnitude and mechanisms of DOC release. To investigate this, we examined the effect of a range of temperatures on DOC release rates and physiological traits of Ecklonia radiata, the most abundant and widespread kelp in Australia that represents a potentially significant contribution to coastal ocean carbon cycling.
View Article and Find Full Text PDFBiotechnol Bioeng
December 2024
Department of Bioinformatics and Computational Biology, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Extremophilic yeasts have favorable metabolic and tolerance traits for biomanufacturing- like lipid biosynthesis, flavinogenesis, and halotolerance - yet the connection between these favorable phenotypes and strain genotype is not well understood. To this end, this study compares the phenotypes and gene expression patterns of biotechnologically relevant yeasts Yarrowia lipolytica, Debaryomyces hansenii, and Debaryomyces subglobosus grown under nitrogen starvation, iron starvation, and salt stress. To analyze the large data set across species and conditions, two approaches were used: a "network-first" approach where a generalized metabolic network serves as a scaffold for mapping genes and a "cluster-first" approach where unsupervised machine learning co-expression analysis clusters genes.
View Article and Find Full Text PDFMicrobiol Spectr
December 2024
Australian National Herbarium, National Research Collections Australia, NCMI, CSIRO, Canberra, Australia.
a unicellular terrestrial microalga found either free-living or in association with lichenized fungi, protects itself from desiccation by synthesizing and accumulating low-molecular-weight carbohydrates such as sorbitol. The metabolism of this algal species and the interplay of sorbitol biosynthesis with its growth, light absorption, and carbon dioxide fixation are poorly understood. Here, we used a recently available genome assembly for to develop a metabolic flux model and analyze the alga's metabolic capabilities, particularly, for sorbitol biosynthesis.
View Article and Find Full Text PDFMetab Brain Dis
December 2024
Department of Hepatology and Gastroenterology, Aarhus University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N, DK-8200, Denmark.
Urea synthesis is an irreversible, essential for maintenance of health and life, and highly regulated liver function with a very high capacity for production of the end-product urea-nitrogen. The set-point of urea synthesis in relation to its overall substrate, the prevailing blood concentration of L-α-amino acids, contributes to determine whole-body nitrogen balance and the size and composition of the plasma free amino acid pool. Ammonia is definitively eliminated from the body by urea synthesis.
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