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Comparative Genomic Analysis of the Human Variant of Methicillin-Resistant CC398 in Japan and Korea. | LitMetric

AI Article Synopsis

Article Abstract

clonal complex (CC) 398 is a major clonal type of livestock-associated methicillin-resistant and comprise both a human variant and a livestock-associated variant. We have previously identified three sequence type (ST) 1232 strains from Japanese patients (THI2018-120 and N1195) and a Vietnamese patient (S36). In this study, we found an ST1232 strain in a Korean patient (BDH17) and compared the genomes of the ST1232 strains isolated in Korea and Japan. Whole-genome sequencing and a phylogenetic tree based on single nucleotide polymorphisms showed that all ST1232 strains were human variants of CC398 and were similar to a common lineage of Southeast Asia. All strains carried ϕSa2, ϕSa3, and Tn, which included Panton-Valentine leukocidin, immune evasion cluster, and antimicrobial resistance genes, respectively. THI2018-120 and N1195 carried slightly different staphylococcal cassette chromosome element from BDH17 due to the insertion of a IS family. In addition, the strains originating from Japanese patients possessed a unique genetic element, -Tn-Tn element. In this study, we found that the ST1232 strains isolated in Korea and Japan are genetically closely related to each other. However, presence of the unique genetic elements suggests that the strains originating from Japanese patients may have evolved independently in Japan.

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Source
http://dx.doi.org/10.1089/mdr.2021.0203DOI Listing

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