Viral pathogens are a major threat to stable crop production. Using a backcross strategy, we find that integrating a dominant brown planthopper (BPH) resistance gene into a high-yield and BPH-susceptible rice variety significantly enhances BPH resistance. However, when -carrying backcross lines are infested with BPH, these BPH-resistant lines exhibit sterile characteristics, displaying panicle enclosure and failure of seed production at their mature stage. As we suspected, BPH-mediated viral infections could cause the observed sterile symptoms, and we characterized rice-infecting viruses using deep metatranscriptomic sequencing. Our analyses revealed eight novel virus species and five known viruses, including a highly divergent virus clustered within a currently unclassified family. Additionally, we characterized rice plant antiviral responses using small RNA sequencing. The results revealed abundant virus-derived small interfering RNAs in sterile rice plants, providing evidence for Dicer-like and Argonaute-mediated immune responses in rice plants. Together, our results provide insights into the diversity of viruses in rice plants, and our findings suggest that multiple virus infections occur in rice plants.
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http://dx.doi.org/10.3390/v13122464 | DOI Listing |
Plant Commun
December 2024
Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China; Yazhouwan National Laboratory, Sanya, 572024, China; Academician workstation, National Nanfan Research Institute (Sanya), Chinese Academy of Agricultural Sciences, Sanya, 572024, China. Electronic address:
By integrating genomes of different accessions, the pangenome can offer more comprehensive and reference-bias-free population genetic information in a species than a single reference genome. With the rapid accumulation of genomic sequencing data and the expanding scope of plant research, the focus of plant pangenomics research has gradually evolved from a single species to multiple species in recent years, giving rise to the concept of super pangenome that cover all genomic sequences of a genus-level taxonomic groups. By integrating more cultivated and wild species, the super pangenome has made significant contributions to the resolution of multiple research areas such as plant genetic diversity, evolution, domestication, and molecular breeding.
View Article and Find Full Text PDFPlant Commun
December 2024
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China. Electronic address:
The chemical modification of DNA and proteins is an efficient way of regulating molecular and biological function and affects a plethora of signalling pathways in eukaryotes. Similarly, recent progress in epitranscriptomics shows that RNA modifications also play crucial roles in diverse biological processes. Since their discovery in the 1970s, scientists have attempted to decipher the identity and functions of these modifications in different biological systems.
View Article and Find Full Text PDFHuan Jing Ke Xue
January 2025
School of Civil and Hydraulic Engineering, Ningxia University, Yinchuan 750021, China.
To comprehensively assess the changing pattern of organic fertilizer substitution with nitrogen fertilizer on the yield of major grains in China, with 102 literature as the research object, through Meta-analysis we quantitatively explored the impacts of soil physicochemical properties, climatic conditions, and different nitrogen fertilizer replacement rates and supplemental application amounts. The results showed that the replacement of nitrogen fertilizer by organic fertilizer could increase crop yields compared with those from the application of nitrogen fertilizer alone, and soil quick-acting potassium content, pH, and annual average temperature had the most significant effects on the yields of the three major grains. When the nitrogen fertilizer replacement rate and the amount of supplemental nitrogen fertilizer applied were 31.
View Article and Find Full Text PDFEcotoxicol Environ Saf
December 2024
Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha 410128, China; National Research Center of Engineering & Technology for Utilization of Botanical Functional Ingredients, Hunan Agricultural University, Changsha 410128, China. Electronic address:
Cadmium (Cd) is a prevalent environmental pollutant in agricultural ecosystems, particularly within paddy ecosystems, is readily absorbed by rice and enter herbivorous insects through the food chain, thereby influencing the implementation of integrated pest management strategies. However, the effect and mechanisms of Cd exposure on the sensitivity of pests in paddy to insecticides remain unclear. Therefore, this study investigated the effects of Cd exposure on the fitness, insecticide sensitivity and symbiotic bacteria of Sogatella furcifera (Horváth) (white-backed planthopper, WBPH).
View Article and Find Full Text PDFPlant Physiol Biochem
December 2024
College of Chemical and Biological Enginerring, Hechi University, 546300, Hechi, China; Guangxi Key Laboratory of Sericulture Ecology and Applied Intelligent Technology/Guangxi Colleges Universities Key Laboratory of Exploitation and Utilization of Microbial and Botanical Resources, 546300, Hechi, China. Electronic address:
High-quality aromatic rice (HAR) is most sensitive to low-temperature stress at the booting stage (LTB), and LTB leads to quality reduction. The key enzymes involved in nitrogen and carbon metabolism significantly affect the synthesis of proteins and starch, thereby influencing the nutritional and taste quality of rice. However, to date, no studies have focused on the after-effects of low-temperature at booting on the quality formation of HAR.
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