How Much Entropy Is Contained in NMR Relaxation Parameters?

J Phys Chem B

Center for Theoretical Chemistry, Ruhr University Bochum, D-44 780 Bochum, Germany.

Published: January 2022

AI Article Synopsis

  • Solution-state NMR relaxation experiments help study protein dynamics at a detailed atomic level, particularly on rapid timescales.
  • Research on T4 lysozyme using molecular dynamics simulations reveals that most backbone entropy is associated with quick dynamics, while slower dynamics of side chains contribute significantly to conformational entropy.
  • Understanding these dynamics is crucial for accurately determining thermodynamic properties of proteins.

Article Abstract

Solution-state NMR relaxation experiments are the cornerstone to study internal protein dynamics at an atomic resolution on time scales that are faster than the overall rotational tumbling time τ. Since the motions described by NMR relaxation parameters are connected to thermodynamic quantities like conformational entropies, the question arises how much of the total entropy is contained within this tumbling time. Using all-atom molecular dynamics simulations of the T4 lysozyme, we found that entropy buildup is rather fast for the backbone, such that the majority of the entropy is indeed contained in the short-time dynamics. In contrast, the contribution of the slow dynamics of side chains on time scales beyond τ on the side-chain conformational entropy is significant and should be taken into account for the extraction of accurate thermodynamic properties.

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Source
http://dx.doi.org/10.1021/acs.jpcb.1c07786DOI Listing

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