EcoPLOT: dynamic analysis of biogeochemical data.

Bioinformatics

Lawrence Berkeley National Laboratory, Berkeley, CA 94710, USA.

Published: February 2022

Motivation: We have created EcoPLOT (parameterized linkage of omics-driven technologies), a web-app for the dynamic, interactive analysis of biogeochemical datasets that combines state-of-the-art analysis tools to statistically and graphically explore environmental, geochemical and microbiome datasets. Using the iterative random forest, a machine learning algorithm, EcoPLOT allows for the de novo discovery of drivers which exhibit significant impact on plant, microbial or soil dynamics.

Availability And Implementation: EcoPLOT is built entirely within the R language. It can be accessed through any system where R is installed, including Windows, Mac and most Linux systems. EcoPLOT is free to use and can be accessed at https://github.com/cdsanchez18/EcoPLOT.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825466PMC
http://dx.doi.org/10.1093/bioinformatics/btab842DOI Listing

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