We investigated the influence of mature of oak trees of various dimensions on soil properties, acorn and oak seedling characteristics in semi-arid forests in western Iran. A total of 24 oak trees were selected in comparable site conditions according to three size categories: small trees (DBH< 20 cm), medium trees (DBH: 20-50 cm) and large trees (DBH> 50 cm). Soil properties, light availability below canopy, acorn dimensions and weight, various below- and above-ground seedling morphological traits were measured. Besides, a seedling quality index (SQI) was also produced as an integrative measure of the seedling response. We found an increasing light availability from small trees to large trees (1512-103 μmol m s) and soil fertility was largely improved from small trees to large trees: soil organic carbon (1.33-2.2%), available phosphorus (12.9-18.1 ppm) and potassium (301.2-470.4 ppm). However, soil properties did not significantly differ between medium and large trees. In contrast, acorn weight and dimensions as well as many seedling traits, including the aerial and belowground biomass and the SQI, were the highest in the medium tree category. To fully explore the relationships among our large set of variables, we produced a partial least square path model which explained 72% of the variation of SQI across the three tree classes. To conclude, we identified a clear effect by mature trees which provided favourable conditions for seedling establishment, but that effect was mediated by tree size and optimal conditions were found below the canopy of medium trees.
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http://dx.doi.org/10.1016/j.jenvman.2021.114269 | DOI Listing |
Front Microbiol
January 2025
School of Science, Engineering and Environment, University of Salford, Salford, United Kingdom.
The microbiota within the guts of insects plays beneficial roles for their hosts, such as facilitating digestion and extracting energy from their diet. The African palm weevil (APW) lives within and feeds on the high lignin-containing trunk of palm trees; therefore, their guts could harbour a large community of lignin-degrading microbes. In this study, we aimed to explore the bacterial community within the gut of the APW larvae, specifically with respect to the potential for lignin degradation in various gut segments as a first step to determining the viability of mining bacterial lignin-degrading enzymes for the bioconversion of lignocellulosic biomass to biofuels and biomaterials.
View Article and Find Full Text PDFRemote Sens (Basel)
January 2024
Department of Public Health Sciences, University of Miami Miller School of Medicine, 1120 NW 14th Street, Soffer Clinical Research Center Room 1065, Miami, FL 33136, USA.
In urban settings, trees and greenery play a vital role in environmental well-being and community vitality. This study explores the impact of Miami-Dade County's tree-planting initiative on urban greenness and considers the influence of climate dynamics. Using Landsat data from 2006 to 2019, we find stable overall greenness, with 5.
View Article and Find Full Text PDFBiophys Rev
December 2024
Evolutionary Bioinformatics Laboratory, Department of Crop Sciences and Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA.
Protein loops and structural domains are building blocks of molecular structure. They hold evolutionary memory and are largely responsible for the many functions and processes that drive the living world. Here, we briefly review two decades of phylogenomic data-driven research focusing on the emergence and evolution of these elemental architects of protein structure.
View Article and Find Full Text PDFGlob Chang Biol
January 2025
Department of Geosciences and Natural Resource Management, University of Copenhagen, Frederiksberg C, Denmark.
Afforestation is increasingly recognized as a critical strategy to restore ecosystems and enhance biodiversity on post-agricultural landscapes. However, agricultural legacies, such as altered soil structure, nutrient imbalances, and depleted microbial diversity, can slow down forest establishment or cause ecosystems to deviate from expected successional trajectories. In this opinion paper, we explore the potential of soil inoculations as a tool to overcome these challenges by introducing beneficial microbial communities that can accelerate ecosystem recovery and forest development.
View Article and Find Full Text PDFBMC Bioinformatics
January 2025
The Novo Nordisk Foundation Center for Biosustainability, Danmarks Tekniske Universitet, Kongens Lyngby, Denmark.
Background: The increasing amount of genomic data calls for tools that can create genome-scale phylogenies quickly and efficiently. Existing tools rely on large reference databases or require lengthy de novo calculations to identify orthologues, meaning that they have long run times and are limited in their taxonomic scope. To address this, we created getphylo, a python tool for the rapid generation of phylogenetic trees de novo from annotated sequences.
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