The purpose of our contribution is to propose a robust and practical order-level classification of the families of Oligochaeta, that is, non-leech Clitellata. The order level is mandatory in Linnaean rank-based classification and is also required in many internet-based biodiversity databases. However, it has received little attention in oligochaete systematics, and the few available order-level classifications of Oligochaeta no longer represent phylogenetic relationships adequately. Our proposal is based on corroborated molecular phylogenetic evidence and takes as benchmarks class level for Clitellata, subclass level for Oligochaeta and Hirudinea, and order level for Crassiclitellata, the monophylum that includes most of the earthworm taxa. As a result, eleven orders are proposed: Alluroidida Timm Martin, 2015; Capilloventrida Timm, n. ordo; Crassiclitellata Jamieson, 1988; Enchytraeida Kasprzak, 1984; Haplotaxida Brinkhurst Jamieson, 1971; Lumbriculida Brinkhurst Jamieson, 1971; Moniligastrida Brinkhurst Jamieson, 1971; Narapida Timm, n. ordo; Parvidrilida Timm, n. ordo; Randiellida Jamieson, 1988; Tubificida Jamieson, 1978. This order-level classification is robust and easily adaptable to future insights into phylogenetic relationships.
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http://dx.doi.org/10.11646/zootaxa.5040.4.9 | DOI Listing |
Front Cell Infect Microbiol
December 2024
Division of Infectious Diseases, Department of Internal Medicine, Yonsei University College of Medicine, Seoul, Republic of Korea.
Introduction: Coronavirus disease 2019 (COVID-19) alters the gut microbiome. This study aimed to assess the association between the disease severity of COVID-19 and changes in stool microbes through a seven-month follow-up of stool collection.
Methods: We conducted a multicentre, prospective longitudinal study of 58 COVID-19 patients and 116 uninfected controls.
Front Cell Infect Microbiol
December 2024
Department of Orthopedics, Affiliated Children's Hospital of Soochow University, Suzhou, China.
Background: Recent studies have indicated the role of the gut microbiota in the progression of osteoarticular diseases, however, the causal relationship between the gut microbiota and pyogenic arthritis remains unclear. There is also a lack of theoretical basis for the application of the gut microbiota in the treatment of pyogenic arthritis.
Methods: In our study, we utilized the largest genome-wide association study (GWAS) data from the MiBioGen Consortium involving 13,400 participants and extracted summary statistical data of the microbiota metabolic pathways of 7,738 participants of European descent from the Dutch Microbiome Project (DMP) The data of pyogenic arthritis were derived from the FinnGen R10 database, including 1,086 patients and 147,221 controls.
Curr Res Microb Sci
October 2024
Genetics and Biotechnology Laboratory, Embrapa Agroenergy, Brasília, DF, 70770-901, Brazil.
Despite recent progress, bacterial degradation of lignin is not completely understood. To address the mechanisms that bacteria from unknown taxonomic groups use to perform lignin-monomer degradation, functional analysis of bacterial metagenome-assembled genomes from soil-derived consortia enriched for microorganisms capable of degrading lignin was performed. A total of 232 metagenome-assembled genomes were recovered.
View Article and Find Full Text PDFISME J
January 2024
Hawai'i Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Kāne'ohe, Hawai'i 96744, United States.
SAR86 is one of the most abundant groups of bacteria in the global surface ocean. However, since its discovery over 30 years ago, it has remained recalcitrant to isolation and many details regarding this group are still unknown. Here, we report the cellular characteristics from the first SAR86 isolate brought into culture, Magnimaribacter mokuoloeensis strain HIMB1674, and use its closed genome in concert with over 700 environmental genomes to assess the phylogenomic and functional characteristics of this order-level lineage of marine Gammaproteobacteria.
View Article and Find Full Text PDFBiol Direct
October 2024
Department of Translational Medicine (DIMET), University of Piemonte Orientale, Via Solaroli 17, I-28100, Novara, Italy.
Alzheimer's disease (AD) is a complex neurodegenerative disorder significantly impairing cognitive faculties, memory, and physical abilities. To characterize the modulation of the gut microbiota in an in vivo AD model, we performed shotgun metagenomics sequencing on 3xTgAD mice at key time points (i.e.
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