Metapopulation models have been a powerful tool for both theorizing and simulating epidemic dynamics. In a metapopulation model, one considers a network composed of subpopulations and their pairwise connections, and individuals are assumed to migrate from one subpopulation to another obeying a given mobility rule. While how different mobility rules affect epidemic dynamics in metapopulation models has been studied, there have been relatively few efforts on comparison of the effects of simple (i.e., unbiased) random walks and more complex mobility rules. Here we study a susceptible-infectious-susceptible (SIS) dynamics in a metapopulation model in which individuals obey a parametric second-order random-walk mobility rule called the node2vec. We map the second-order mobility rule of the node2vec to a first-order random walk in a network whose each node is a directed edge connecting a pair of subpopulations and then derive the epidemic threshold. For various networks, we find that the epidemic threshold is large (therefore, epidemic spreading tends to be suppressed) when the individuals infrequently backtrack or infrequently visit the common neighbors of the currently visited and the last visited subpopulations than when the individuals obey the simple random walk. The amount of change in the epidemic threshold induced by the node2vec mobility is in general not as large as, but is sometimes comparable with, the one induced by the change in the diffusion rate for individuals.
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http://dx.doi.org/10.1016/j.jtbi.2021.110960 | DOI Listing |
J Math Biol
December 2024
School of Mathematics and Statistics, The University of Melbourne, Parkville, Australia.
The epidemiological behavior of Plasmodium vivax malaria occurs across spatial scales including within-host, population, and metapopulation levels. On the within-host scale, P. vivax sporozoites inoculated in a host may form latent hypnozoites, the activation of which drives secondary infections and accounts for a large proportion of P.
View Article and Find Full Text PDFISME J
December 2024
Institute of Environmental Sciences, Department of Plant Pathology and Microbiology, Robert H. Smith Faculty of Agriculture, Food, and Environment, Hebrew University, Rehovot 76100, Israel.
Microbial communities thrive in virtually every habitat on Earth and are essential to the function of diverse ecosystems. Most microbial habitats are not spatially continuous and well-mixed, but rather composed, at the microscale, of many isolated or semi-isolated local patches of different sizes, resulting in partitioning of microbial populations into discrete local populations. The impact of this spatial fragmentation on population dynamics is not well-understood.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
December 2024
Complexity Science and Evolution Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Tancha, Onna, Kunigami, Okinawa 904-0495, Japan.
The epidemiology and evolution of diseases unfold in populations that are rarely homogeneous. Instead, hosts infected by pathogens often form metapopulations, in which local populations connected by the movement of hosts experience different demographic and epidemiological conditions. Here, we develop a general theory of the evolution of pathogens in heterogeneous metapopulations.
View Article and Find Full Text PDFDispersal is a fundamental ecological process that influences population dynamics and genetic diversity and is therefore an important component of the models used to simulate population responses to environmental change. We considered informed dispersal in relation to settlement location, where individuals could optimise selection of settlement location with regard to per capita resource availability and investigated the importance of this type of informed dispersal for simulated demography and genetic diversity under different biological and environmental scenarios. We used an individual-based simulation model scaled with reference to the ecology of small mammals in fire prone savanna ecosystems.
View Article and Find Full Text PDFPLoS Comput Biol
December 2024
Institute of Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany.
In the realm of infectious disease control, accurate modeling of the transmission dynamics is pivotal. As human mobility and commuting patterns are key components of communicable disease spread, we introduce a novel travel time aware metapopulation model. Our model aims to enhance estimations of disease transmission.
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