Genome-wide identification and expression analysis of in peanut ( L.).

PeerJ

Henan Agricultural University, College of Agronomy & Center for Crop Genome Engineering, Henan Agricultural University, Henan, China, Zhengzhou, Henan Province, China.

Published: October 2021

AI Article Synopsis

  • Auxin response factors (ARFs) are key transcription factors in plants that regulate auxin response genes, critical for growth and development; this study focuses on identifying ARF genes in peanuts (Arachis hypogaea).
  • A total of 61 ARF genes were identified and categorized into six groups based on molecular analysis, revealing structural features like the B3 domain and specific auxin response domains; expression levels of these genes varied significantly across different peanut tissues.
  • Results indicated that certain ARF genes were highly expressed in stems and branches, and that their expression was affected by auxin treatment, with implications for pod development, particularly highlighting the role of one ARF in larger peanut pod formation

Article Abstract

Auxin response factors (ARFs) are transcription factors that regulate the expression of auxin response genes, and have important functions in plant growth and development. In this study, available genome data for peanut ( L.) were used to identify genes. In total, 61 and 23 were divided into six groups (I-VI). Molecular structural analysis revealed that the protein members of AhARF contain at least two domains, the B3 domain and the Auxin-resp domain, and that some have a C-terminal dimerisation domain. Screening of the transcriptome data of 22 tissues of cv. Tifrunner in a public database showed high expression levels of and . was expressed more highly in the stem and branch than in the root and leaf of the wild species () and cultivated species H103. After treatment with exogenous auxin (NAA), the expression of was inhibited, and this inhibition was greater in than in H103. The transcriptome map revealed that the expression of was higher in the larger pods of H8107 and ZP06 than in the medium pods of H103 and small pods of . Moreover, -5 was proven to be localised in the nucleus, consistent with the location of . These results suggest that may play an important role in pod development in peanut.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8542371PMC
http://dx.doi.org/10.7717/peerj.12319DOI Listing

Publication Analysis

Top Keywords

auxin response
8
expression
5
genome-wide identification
4
identification expression
4
expression analysis
4
analysis peanut
4
peanut auxin
4
response factors
4
factors arfs
4
arfs transcription
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!