Bacterial infection and inflammation of the airways are the leading causes of morbidity and mortality in persons with cystic fibrosis (CF). The ecology of the bacterial communities inhabiting CF airways is poorly understood, especially with respect to how community structure, dynamics, and microbial metabolic activity relate to clinical outcomes. In this study, the bacterial communities in 818 sputum samples from 109 persons with CF were analyzed by sequencing bacterial 16S rRNA gene amplicons. We identified eight alternative community types (pulmotypes) by using a Dirichlet multinomial mixture model and studied their temporal dynamics in the cohort. Across patients, the pulmotypes displayed chronological patterns in the transition among each other. Furthermore, significant correlations between pulmotypes and patient clinical status were detected by using multinomial mixed effects models, principal components regression, and statistical testing. Constructing pulmotype-specific metabolic activity profiles, we found that pulmotype microbiota drive distinct community functions including mucus degradation or increased acid production. These results indicate that pulmotypes are the result of ordered, underlying drivers such as predominant metabolism, ecological competition, and niche construction and can form the basis for quantitative, predictive models supporting clinical treatment decisions.
The gut microbiome, a complex community of trillions of microorganisms in the intestines, is crucial in maintaining human health. Recent advancements in microbiome research have unveiled a compelling link between the gut microbiome and cancer development and progression. Alterations in the composition and function of the gut microbiome, known as dysbiosis, have been implicated in various types of cancer, including, esophageal, liver, colon, pancreatic, and gastrointestinal.
Urbanization increases the extent of impervious surfaces, runoff, sediment, and nutrient loadings downstream, leading to the deterioration of urban surface waters. During pollutant wash-off from urban surfaces, the peak concentration of pollutants typically occurs after the rainfall peak. However, current urban wash-off models do not consider this time delay, assuming that the effect of rainfall on the wash-off process is immediate.
Since the 1990's, attempted restoration of blanket bogs which have been previously afforested with non-native conifers has taken place in Ireland and Britain, with the aim of reinstating hydrological functioning and hence, peatland biodiversity. Here, we assess the conservation benefit of these restoration measures at sites in the west of Ireland, 16-20 years post works, by comparing avian communities between trios of restored (n = 6), near-natural (n = 6), and afforested (n = 6) lowland blanket bogs. We assessed avian community response in terms of differences in the richness and density of all bird species and of Birds of Conservation Concern in Ireland (BoCCI), as well as community composition.
Consortium for Health and Military Performance, Department of Military and Emergency Medicine, F. Edward Hébert School of Medicine, Uniformed Services University, Bethesda, Maryland.
Introduction: Americans have increased their intake of food away from home, which is lower in quality and higher in calories than food prepared at home. The increase of operations that serve food also impacts the military nutrition environment-including all foods, beverages, and dietary supplements available to the military community-and its role in nutritional fitness.
Methods: As part of a pilot study, 5 military installations used the online Military Nutrition Environment Assessment Tool to evaluate their local food landscape.
Deer are the most abundant large herbivores in temperate and boreal forests across the Northern Hemisphere. They are ecosystem engineers known to alter understory vegetation and future tree species composition by selective browsing. Also, deer have strong impacts on faunistic groups, often mediated by vegetation.
