The nature of H-bonds in κ-carrabiose⋯Y (Y = HF, HCl, HBr, NH, HO, and HS) complexes was studied. For this aim, the structure of isolated κ-carrabiose was optimized using three global hybrids functional: B3LYP, PBE0, and M06-2X combined with 6-311G** basis set. Subsequently, the κ-carrabiose in the presence of HF, HCl, HBr, NH, HO, and HS was optimized using the CBS-4 M method. NBO analyses were then carried out at the MP2/6-311G** level of theory. A particular interest was focused on C-H⋯Y bond. The results reveal that the C-H⋯Y bond is an improper H-bond since a significant contraction of C-H was observed during the complexation leading to a significant blueshifted stretching frequency. The NBO analyses have shown that the formation of the improper H-bonds C-H⋯Y (Y = F, Cl, Br, N, O, and S) is principally due to the increase of the s-character of the hybrid orbital in carbon atom (rehybridization) in κ-carrabiose⋯Y complexes. Regarding the polarization, it was proved that more the H-bond center (carbon in C-H⋯Y) becomes less positive, the hydrogen more positive, and Y more negative; more the contraction of the C-H bond is important. It was also confirmed for intramolecular H-bonds in κ-carrabiose⋯Y complexes that the rehybridization is responsible for H-bonds nature either proper or improper.
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http://dx.doi.org/10.1007/s00894-021-04904-z | DOI Listing |
Nat Commun
January 2025
Department of Chemistry Education, Seoul National University, Seoul, Republic of Korea.
In terms of safety and emergency response, identifying hazardous gaseous acid chemicals is crucial for ensuring effective evacuation and administering proper first aid. However, current studies struggle to distinguish between different acid vapors and remain in the early stages of development. In this study, we propose an on-site monitorable acid vapor decoder, MOF-808-EDTA-Cu, integrating the robust MOF-808 with Cu-EDTA, functioning as a proton-triggered colorimetric decoder that translates the anionic components of corrosive acids into visible colors.
View Article and Find Full Text PDFJ Phys Chem A
January 2025
Institute of atomic and molecular physics, Jilin University, Changchun 130012, China.
The information entropy based on the occupation numbers has been found to play a central role in a description of electron correlation within the density-matrix functional theory [-DMFT, see , 128, 013001]. In this article, the -DMFT method is applied to predict potential energy curves, equilibrium bond lengths, and harmonic vibrational frequencies for the hydrogen halides: HF, HCl, and HBr. The results are compared with other theoretical calculations and experimental spectroscopic data.
View Article and Find Full Text PDFActa Crystallogr E Crystallogr Commun
October 2024
Carlson School of Chemistry and Biochemistry, Clark University, 950 Main St., Worcester, MA 01610, USA.
Reaction of 2-amino-5-iodo-pyridine (5IAP) with concentrated HBr at room temperature yielded 2-amino-5-iodo-pyridinium bromide, CHIN ·Br or (5IAPH)Br. The complex formed pale-yellow crystals, which exhibit significant hydrogen bonding between the amino and pyridinium N-H donors and bromide ion acceptors. Halogen bonding is also observed.
View Article and Find Full Text PDFPhys Chem Chem Phys
January 2025
School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.
Nucleophilicities for a range of simple carbene molecules acting as hydrogen bond acceptors B in forming complexes B⋯HX are reported. The carbenes chosen to fulfil the roles of a Lewis base are B = RM, -(CH)M, HCCM and two N-heterocyclic carbenes, where M is one of the group 14 tetrel atoms, C, Si, Ge or Sn and R = H, CH, and F. All the carbenes but CH have a singlet electronic ground state.
View Article and Find Full Text PDFJ Phys Chem B
October 2024
Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
The acidity of hydrohalic acids increases down the group, with HF and HI being the weakest and strongest acids. Electronic structure calculations suggest that the critical electric fields required for the dissociation of HF, HCl, HBr, and HI are 347, 193, 163, and 153 MV cm, respectively, which are proportional to their corresponding p values and emphasize that in these systems the bond dissociation energy determines the p. The solvent configuration plays a significant role in the acid dissociation process, which is illustrated by a particular configuration of three water molecules around HX and favors dissociation of only HBr, even though the critical electric field required for the dissociation of HI is lower than that of HBr, as depicted in the graphical abstract.
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