Background: , also known as was reported to be a -regulated long noncoding RNA (lncRNA), which played an essential role in the pathogenesis of breast cancer (BC). We aimed to observe the potential association between polymorphisms and BC risk in Northern Chinese Han females.
Methods: Totally, 555 healthy individuals and 561 patients with BC were recruited. Five candidate SNPs (rs6499221, rs3931698, rs8044565, rs3852740, and rs111577197) of were genotyped with the Agena MassARRAY system. Odds ratio (OR) and 95% confidence intervals (CIs) were applied to evaluate the relationship of genetic polymorphisms with BC susceptibility. Additionally, stratification analysis based on clinical features and haplotype analysis were also conducted. Finally, multifactor dimensionality reduction (MDR) analysis was performed to assess the SNP-SNP interaction among LOC105371267 variants, and false-positive report probability (FPRP) analysis was used to validate the result of this study.
Results: In this study, rs3931698 was a protective factor of BC in total (GG homozygote: OR = 0.30, 95% CI: 0.11-0.82, =0.018; recessive model: OR = 0.30, 95% CI: 0.11-0.84, =0.021). In stratification analysis based on the average age of 52 years and clinical characteristics (PR status, III-IV TNM stage), rs3931698 was also demonstrated to be associated with BC susceptibility. In addition, rs6499221 and rs3852740 were also associated with BC susceptibility among patients at age <52 years and patients with BC in a positive status. Thus, the haplotype analysis had a negative result for the incidence of BC ( > 0.05), and haplotype consisting of rs8044565 and rs111577197 was nonsignificantly associated with the BC risk. Finally, MDR and FPRP analyses also validated the result of this study.
Conclusion: Polymorphisms rs3931698, rs6499221, and rs3852740 of were found to be associated with the risk of BC in total, and stratification analysis in the Northern Chinese Han females suggested that variants might be helpful to predict BC progression.
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http://dx.doi.org/10.1155/2021/4990695 | DOI Listing |
BMC Plant Biol
December 2024
Key Laboratory of Biology and Genetics Improvement of Soybean, Zhongshan Biological Breeding Laboratory (ZSBBL), State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, College of Agriculture, Ministry of Agriculture, National Innovation Platform for Soybean Breeding and Industry-Education Integration, Nanjing Agricultural University, Nanjing, 210095, China.
Background: Vegetable soybean is an important legume vegetable. High sucrose content is a significant quality characteristic of vegetable soybean that influences consumers' taste. However, the genetic basis of sucrose content in vegetable soybean is currently unclear.
View Article and Find Full Text PDFCell Metab
December 2024
State Key Laboratory of Analytical Chemistry for Life Science, Medical School, Nanjing University, Nanjing 210093, China; Center for Translational Medicine and Jiangsu Key Laboratory of Molecular Medicine, Medical School, Nanjing University, Nanjing 210093, China. Electronic address:
The essential amino acid methionine plays a pivotal role in one-carbon metabolism, facilitating the production of S-adenosylmethionine (SAM), a critical supplier for DNA methylation and thereby a modulator of gene expression. Here, we report that the methionine cycle is disrupted in skeletal muscle during cancer cachexia, leading to endoplasmic reticulum stress and DNA hypomethylation-induced expression of the DNA damage inducible transcript 4 (Ddit4) gene, encoding the regulated in development and DNA damage response 1 (REDD1) protein. Targeting DNA methylation by depletion or pharmacological inhibition of DNA methyltransferase 3A (DNMT3A) exacerbates cachexia, while restoring DNMT3A expression or REDD1 knockout alleviates cancer cachexia-induced skeletal muscle atrophy in mice.
View Article and Find Full Text PDFEnviron Int
December 2024
CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Carbon Neutral Innovation Research Center, Fujian Key Laboratory of Marine Carbon Sequestration, Xiamen University, Xiamen, 361005, China. Electronic address:
Despite the emergence of antibiotic resistance genes (ARGs) and antibiotic resistant bacteria (ARBs), how biological inter-trophic interactions, modulated by watershed urbanization, shape the resistome remains unexplored. We collected water samples from the highly urbanized (western: 65 % built land, sewage-affected) and lesser-urbanized (northern: 25 % built land, drinking water source) downstream tributaries of the Jiulong River in southeast China over dry and wet seasons. We utilized metagenomic and amplicon (16S and 18S rDNA) sequencing to investigate the relationships among microeukaryotic algae, consumer protists, bacterial communities, and the resistome.
View Article and Find Full Text PDFSci Total Environ
December 2024
State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
The oxidative potential (OP) of particulate matter (PM) is crucial for understanding its ability to generate reactive oxygen species. However, the major chemical drivers influencing OP still need to be better understood. This study investigated the seasonal variations of OP and identified key drivers and source mechanisms in the industrial city of Zibo, located in North China Plain.
View Article and Find Full Text PDFJ Hazard Mater
December 2024
College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China.
With the phase-out of legacy persistent organic pollutants (POPs), the ocean's role is evolving, potentially acting as both a reservoir and a source. This study investigates the air-sea fluxes of the first banned POPs, such as organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCBs), using literature from Web of Science up to 2023. OCP and PCB concentrations in air and seawater show significant spatiotemporal variability.
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