The stem-loop (SL1) is the 5'-terminal structural element within the single-stranded SARS-CoV-2 RNA genome. It is formed by nucleotides 7-33 and consists of two short helical segments interrupted by an asymmetric internal loop. This architecture is conserved among Betacoronaviruses. SL1 is present in genomic SARS-CoV-2 RNA as well as in all subgenomic mRNA species produced by the virus during replication, thus representing a ubiquitous cis-regulatory RNA with potential functions at all stages of the viral life cycle. We present here the H, C and N chemical shift assignment of the 29 nucleotides-RNA construct 5_SL1, which denotes the native 27mer SL1 stabilized by an additional terminal G-C base-pair.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401371PMC
http://dx.doi.org/10.1007/s12104-021-10047-2DOI Listing

Publication Analysis

Top Keywords

stem-loop sl1
8
sars-cov-2 rna
8
assignment stem-loop
4
sl1
4
sl1 5'-utr
4
5'-utr sars-cov-2
4
sars-cov-2 stem-loop
4
sl1 5'-terminal
4
5'-terminal structural
4
structural element
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!