Identical Viral Genetic Sequence Found in Black Flies ( ) and the Equine Index Case of the 2006 U.S. Vesicular Stomatitis Outbreak.

In 2006, vesicular stomatitis New Jersey virus (VSNJV) caused outbreaks in Wyoming (WY) horses and cattle after overwintering in 2004 and 2005. Within two weeks of the outbreak onset, 12,203 biting flies and 194 grasshoppers were collected near three equine-positive premises in Natrona County, WY. Insects were identified to the species level and tested by RT-qPCR for VSNJV polymerase (L) and phosphoprotein (P) gene RNA. Collected dipterans known to be competent for VSV transmission included black flies and biting midges. VSNJV L and P RNA was detected in two pools of female and subjected to partial genome sequencing. Phylogenetic analysis based on the hypervariable region of the P gene from black flies showed 100% identity to the isolate obtained from the index horse case on the same premises. This is the first report of VSNJV in in WY and the first field evidence of possible VSV maintenance in black fly populations during an outbreak.