Deep learning methods have had outstanding performances in various fields. A fundamental query is why they are so effective. Information theory provides a potential answer by interpreting the learning process as the information transmission and compression of data. The information flows can be visualized on the information plane of the mutual information among the input, hidden, and output layers. In this study, we examine how the information flows are shaped by the network parameters, such as depth, sparsity, weight constraints, and hidden representations. Here, we adopt autoencoders as models of deep learning, because (i) they have clear guidelines for their information flows, and (ii) they have various species, such as vanilla, sparse, tied, variational, and label autoencoders. We measured their information flows using Rényi's matrix-based α-order entropy functional. As learning progresses, they show a typical fitting phase where the amounts of input-to-hidden and hidden-to-output mutual information both increase. In the last stage of learning, however, some autoencoders show a simplifying phase, previously called the "compression phase", where input-to-hidden mutual information diminishes. In particular, the sparsity regularization of hidden activities amplifies the simplifying phase. However, tied, variational, and label autoencoders do not have a simplifying phase. Nevertheless, all autoencoders have similar reconstruction errors for training and test data. Thus, the simplifying phase does not seem to be necessary for the generalization of learning.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8303402 | PMC |
http://dx.doi.org/10.3390/e23070862 | DOI Listing |
Biotechnol Prog
January 2025
Graduate School of Interdisciplinary Science and Engineering in Health Systems, Okayama University, Okayama, Japan.
The production of disulfide-containing recombinant proteins often requires refolding of inclusion bodies before purification. A pre-refolding purification step is crucial for effective refolding because impurities in the inclusion bodies interfere with refolding and subsequent purification. This study presents a new pre-refolding procedure using a reversible S-cationization technique for protein solubilization and purification by reversed-phase high performance liquid chromatography.
View Article and Find Full Text PDFEnzyme Microb Technol
January 2025
Institute of Biotechnology and Genetic Engineering, Chulalongkorn University, Bangkok 10330, Thailand; Center of Excellence in Bioconversion and Bioseparation for Platform Chemical Production, Institute of Biotechnology and Genetic Engineering, Chulalongkorn University, Bangkok 10330, Thailand; Water Science and Technology for Sustainable Environment Research Unit, Chulalongkorn University, Bangkok 10330, Thailand. Electronic address:
Inducer-free expression systems are promising tools for biorefinery because they can reduce the reliance on inducers, reducing production costs and simplifying processes. Owing to their broad range of substrate structures and catalytic reactions, cytochrome P450s are promising biocatalysts to produce value-added compounds. However, unsuitable levels of cytochrome P450 expression could result in cell stress, affecting the efficiency of the biocatalyst.
View Article and Find Full Text PDFThe integration of large-scale power electronic equipment has intensified harmonic issues in power systems. Accurate harmonic models are fundamental for evaluating and mitigating harmonic problems, but existing models still exhibit deficiencies in harmonic mechanism, model complexity and accuracy. This work proposes a calculation method of crossed frequency admittance matrix (CFAM) analytical model based on piecewise linearization, aiming to achieve accurate modeling of phase-controlled power electronic harmonic sources.
View Article and Find Full Text PDFSensors (Basel)
January 2025
Institute of Semiconductor Technology (IHT), Technische Universität Braunschweig, Hans-Sommer-Straße 66, 38106 Braunschweig, Germany.
A novel piezoresistive cantilever microprobe (PCM) with an integrated electrothermal or piezoelectric actuator has been designed to replace current commercial PCMs, which require external actuators to perform contact-resonance imaging (CRI) of workpieces and avoid unwanted "forest of peaks" observed at large travel speed in the millimeter-per-second range. Initially, a PCM with integrated resistors for electrothermal actuation (ETA) was designed, built, and tested. Here, the ETA can be performed with a piezoresistive Wheatstone bridge, which converts mechanical strain into electrical signals by boron diffusion in order to simplify the production process.
View Article and Find Full Text PDFBiomedicines
January 2025
Department of Cardiovascular & Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA.
: Macrophages play a pivotal role in various pathogenic processes, necessitating the development of efficient differentiation techniques to meet the high demand for these cells in research and therapy. Human macrophages can be obtained via culturing peripheral blood monocytes; however, this source has limited yields and requires patient contact for each proposed use. In addition, it would be difficult to perform gene editing on peripheral blood monocytes.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!