Interpretability has emerged as a crucial aspect of building trust in machine learning systems, aimed at providing insights into the working of complex neural networks that are otherwise opaque to a user. There are a plethora of existing solutions addressing various aspects of interpretability ranging from identifying prototypical samples in a dataset to explaining image predictions or explaining mis-classifications. While all of these diverse techniques address seemingly different aspects of interpretability, we hypothesize that a large family of interepretability tasks are variants of the same central problem which is identifying change in a model's prediction. This paper introduces MARGIN, a simple yet general approach to address a large set of interpretability tasks MARGIN exploits ideas rooted in graph signal analysis to determine influential nodes in a graph, which are defined as those nodes that maximally describe a function defined on the graph. By carefully defining task-specific graphs and functions, we demonstrate that MARGIN outperforms existing approaches in a number of disparate interpretability challenges.
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http://dx.doi.org/10.3389/fdata.2021.589417 | DOI Listing |
BMC Bioinformatics
January 2025
Beijing Institute of Heart Lung and Blood Vessel Diseases, Beijing Anzhen Hospital of Capital Medical University, Beijing, 101100, China.
Background: MicroRNAs (miRNAs) are pivotal in the initiation and progression of complex human diseases and have been identified as targets for small molecule (SM) drugs. However, the expensive and time-intensive characteristics of conventional experimental techniques for identifying SM-miRNA associations highlight the necessity for efficient computational methodologies in this field.
Results: In this study, we proposed a deep learning method called Multi-source Data Fusion and Graph Neural Networks for Small Molecule-MiRNA Association (MDFGNN-SMMA) to predict potential SM-miRNA associations.
BMC Cancer
January 2025
Department of Data Science, Faculty of Interdisciplinary Science and Technology, Tarbiat Modares University, Tehran, Iran.
Background: Melanoma is a highly aggressive skin cancer, where early and accurate diagnosis is crucial to improve patient outcomes. Dermoscopy, a non-invasive imaging technique, aids in melanoma detection but can be limited by subjective interpretation. Recently, machine learning and deep learning techniques have shown promise in enhancing diagnostic precision by automating the analysis of dermoscopy images.
View Article and Find Full Text PDFEur Phys J E Soft Matter
January 2025
Institut für Theoretische Physik 1, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Bavaria, Germany.
We employ graph neural networks (GNN) to analyse and classify physical gel networks obtained from Brownian dynamics simulations of particles with competing attractive and repulsive interactions. Conventionally such gels are characterized by their position in a state diagram spanned by the packing fraction and the strength of the attraction. Gel networks at different regions of such a state diagram are qualitatively different although structural differences are subtile while dynamical properties are more pronounced.
View Article and Find Full Text PDFSci Rep
January 2025
School of Chemical, Petroleum and Gas Engineering, Iran University of Science and Technology, P.O. Box: 16765-163, Tehran, Iran.
In this study, Response Surface Methodology (RSM) and Artificial Neural Networks (ANN) were developed to estimate the equilibrium solubility and partial pressure of CO in blended aqueous solutions of diisopropanolamine (DIPA) and 2-amino-2-methylpropanol (AMP). In this study, several key parameters were analyzed to understand the behavior of the aqueous DIPA/AMP system for CO capture. Including DIPA (9-21 wt%), AMP (9-21 wt%), temperature (323.
View Article and Find Full Text PDFSurg Endosc
January 2025
Department of Clinical Medicine, Aalborg University, Aalborg, Denmark.
Objectives: This study aimed to develop an automated skills assessment tool for surgical trainees using deep learning.
Background: Optimal surgical performance in robot-assisted surgery (RAS) is essential for ensuring good surgical outcomes. This requires effective training of new surgeons, which currently relies on supervision and skill assessment by experienced surgeons.
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