Incorporation of backbone modifications in mRNA-displayable peptides.

Methods Enzymol

Department of Chemistry, Graduate School of Science, The University of Tokyo, Tokyo, Japan. Electronic address:

Published: August 2021

Here we comprehensively summarize the most recent efforts in our research team, aiming at installing N-methyl and azole backbones into peptides expressed in translation. The genetic code reprogramming using the Flexible In-vitro Translation system (FIT system) has proven to be the most reliable and versatile approach for ribosomally installing various exotic amino acids. However, it had been yet difficult in translating diverse kinds of multiple and consecutive sequences of N-methyl amino acids (AAs). We have recently reported that a semi-rational fine tuning of AA-tRNA affinities for EF-Tu by altering tRNA T-stem sequence achieves efficient delivery of AA-tRNAs to the ribosome. Indeed, this approach has made it possible to express N-methyl-peptides containing multiple AAs with a remarkably high fidelity. Another interesting backbone modification in peptides is azole moieties often found in natural products, but they are explicitly installed by post-translational modifying enzymes. We have recently devised a method to bypass such enzymatic processes where a bromovinyl group-containing amino acid is incorporated into the peptide by genetic code reprogramming and then chemically converted to an azole group via an intramolecular heterocyclization reaction. These methods will grant more drug-like properties to peptides than ordinary peptides in terms of protease resistance and cell membrane permeability. Particularly when they can be integrated with in vitro mRNA display, such as the RaPID system, the discovery of de novo bioactive peptides can be realized.

Download full-text PDF

Source
http://dx.doi.org/10.1016/bs.mie.2021.05.015DOI Listing

Publication Analysis

Top Keywords

genetic code
8
code reprogramming
8
amino acids
8
peptides
6
incorporation backbone
4
backbone modifications
4
modifications mrna-displayable
4
mrna-displayable peptides
4
peptides comprehensively
4
comprehensively summarize
4

Similar Publications

How life developed in its earliest stages is a central but notoriously difficult question in science. The earliest lifeforms likely used a reduced set of codon sequences that were progressively completed over time, driven by chemical, physical, and combinatorial constraints. However, despite its importance for prebiotic chemistry, UV radiation has not been considered a selection pressure for the evolution of early codon sequences.

View Article and Find Full Text PDF

HLA-B*15:245:02Q differs from HLA-B*15:01:01:01 by two nonsynonymous nucleotides exchanges in exon 3.

View Article and Find Full Text PDF

HLA-C*03:657 differs from HLA-C*03:04:01:02 by one nucleotide substitution in codon 82 in exon 2.

View Article and Find Full Text PDF

Description of the novel HLA-DQA1*05:118 and -DQB1*03:01:01:73 alleles.

View Article and Find Full Text PDF

The novel HLA-DQB1*06:469 allele differs from HLA-DQB1*06:01:01:01 by one nucleotide substitution in codon 187 in exon 3.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!