The Euler characteristic i.e., the difference between the number of vertices |V| and edges |E| is the most important topological characteristic of a graph. However, to describe spectral properties of differential equations with mixed Dirichlet and Neumann vertex conditions it is necessary to introduce a new spectral invariant, the generalized Euler characteristic [Formula: see text], with [Formula: see text] denoting the number of Dirichlet vertices. We demonstrate theoretically and experimentally that the generalized Euler characteristic [Formula: see text] of quantum graphs and microwave networks can be determined from small sets of lowest eigenfrequencies. If the topology of the graph is known, the generalized Euler characteristic [Formula: see text] can be used to determine the number of Dirichlet vertices. That makes the generalized Euler characteristic [Formula: see text] a new powerful tool for studying of physical systems modeled by differential equations on metric graphs including isoscattering and neural networks where both Neumann and Dirichlet boundary conditions occur.
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