Kinetic, metabolic, and statistical analytics: addressing metabolic transport limitations among organelles and microbial communities.

Curr Opin Biotechnol

Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, 3400 North Charles Street, Baltimore, MD, 21218, USA.

Published: October 2021

Microbial organisms engage in a variety of metabolic interactions. A crucial part of these interactions is the exchange of molecules between different organelles, cells, and the environment. The main forces mediating this metabolic exchange are transporters. This transport can be difficult to measure experimentally because several transport mechanisms remain opaque. However, theoretical calculations about the inputs and outputs of cells via metabolic exchanges have enabled the successful inference of the workings of intra-organismal and inter-organismal systems. Kinetic, metabolic, and statistical modeling approaches in combination with omics data are enhancing our knowledge and understanding about metabolic exchange and mass resource allocation. This model-driven analytics approach can guide effective experimental design and yield new insights into biological function and control.

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http://dx.doi.org/10.1016/j.copbio.2021.06.024DOI Listing

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