In molecular-stream separation (MSS), a stream of a multicomponent mixture is separated into multiple streams of individual components. Quantitative evaluation of MSS data has been a bottleneck in MSS for decades as there was no conventional way to present the data in a reproducible and uniform fashion. The roots of the problem were in the multidimensional nature of MSS data; even in the ideal case of steady-state separation, the data is three-dimensional: intensity and two spatial coordinates. We recently found a way to reduce the dimensionality via presenting the MSS data in a polar coordinate system and convoluting the data via integration of intensity along the radius axis. The result of this convolution is an angulagram, a simple 2D plot presenting integrated intensity vs angle. Not only does an angulagram simplify the visual assessment, but it also allows the determination of three quantitative parameters characterizing the quality of MSS: stream width, stream linearity, and stream deflection. Reliably converting an MSS image into an angulagram and accurately determining the stream parameters requires an advanced and user-friendly software tool. In this technical note, we introduce such a tool: the open-source software Topino available at https://github.com/Schallaven/topino. Topino is a stand-alone program with a modern graphical user interface that allows processing an MSS image in a fast (<2 min) and straightforward way. The robustness and ruggedness of Topino were confirmed by comparing the results obtained by three users. Topino removes the analytical bottleneck in MSS and will be an indispensable tool for MSS users with varying levels of experience.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1021/acs.analchem.1c01229 | DOI Listing |
Open Med (Wars)
December 2024
Department of Immunology, Basic Medical Institute, Chengde Medical College, Chengde 067000, Hebei, China.
Background: Microsatellite instability (MSI) significantly impacts treatment response and outcomes in colon cancer; however, its underlying molecular mechanisms remain unclear. This study aimed to identify prognostic biomarkers by comparing MSI and microsatellite stability (MSS).
Methods: Data from the GSE39582 dataset downloaded from the Gene Expression Omnibus database were analyzed for differentially expressed genes (DEGs) and immune cell infiltration between MSI and MSS.
NPJ Syst Biol Appl
December 2024
Department of Developmental Biology and Genetics, Indian Institute of Science, Bengaluru, 560012, India.
Dysregulated pH is now recognised as a hallmark of cancer. Recent evidence has revealed that the endosomal pH regulator Na/H exchanger NHE9 is upregulated in colorectal cancer to impose a pseudo-starvation state associated with invasion, highlighting an underexplored mechanistic link between adaptive endosomal reprogramming and malignant transformation. In this study, we use a model that quantitatively captures the dynamics of the core regulatory network governing epithelial mesenchymal plasticity.
View Article and Find Full Text PDFClin Oncol (R Coll Radiol)
November 2024
State Key Laboratory of Systems Medicine for Cancer, Department of Oncology, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200127, China. Electronic address:
Aims: Programmed death-1 (PD-1) or programmed death-ligand 1 (PD-L1) inhibitors have shown limited effectiveness in patients with microsatellite stable (MSS) metastatic colorectal cancer (mCRC). Combining anti-angiogenesis inhibitors with PD-1 inhibitors has the potential to reverse the immunosuppressive tumour microenvironment, synergistically enhancing the anti-tumour immune response in MSS mCRC. The goal is to present real-world data that prove the clinical efficacy and safety of fruquintinib combined with PD-1 inhibitors in MSS mCRC.
View Article and Find Full Text PDFCancer Nurs
December 2024
Author Affiliations: School of Nursing, Sun Yat-Sen University (Mss Chen, Guan, Yang, Guo, Huang, and Li and Dr Yan); Department of Gynecologic Oncology, Sun Yat-Sen University Cancer Center (Ms Jiang); and Department of Gynecology, The Third Affiliated Hospital, Sun Yat-Sen University (Ms Zhang), Guangzhou, Guangdong Province, People's Republic of China.
Background: Patients with gynecologic cancer who undergo lymphadenectomy are at increased risk of lower extremity lymphedema (LEL). They are encouraged to be alert to the possibility of LEL and take risk-management measures throughout life. However, we know little about the perception for LEL and adherence to risk-management measures of Chinese patients with gynecologic cancer.
View Article and Find Full Text PDFSensors (Basel)
November 2024
Department of Digital Industry Technologies, National and Kapodistrian University of Athens, Dirfies Messapies, 34400 Athens, Greece.
The goal of the study presented in this work is to evaluate the performance of a proposed adaptive beamforming approach when combined with non-orthogonal multiple access (NOMA) in cell-free massive multiple input multiple output (CF m-MIMO) orientations. In this context, cooperative beamforming is employed taking into consideration the geographically adjacent access points (APs) of a virtual cell, aiming to minimize co-channel interference (CCI) among mobile stations (MSs) participating in NOMA transmission. Performance is evaluated statistically via extensive Monte Carlo (MC) simulations in a two-tier wireless orientation.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!