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Ageing is a major risk factor for many conditions including cancer, cardiovascular and neurodegenerative diseases. Pharmaceutical interventions that slow down ageing and delay the onset of age-related diseases are a growing research area. The aim of this study was to build a machine learning model based on the data of the DrugAge database to predict whether a chemical compound will extend the lifespan of Caenorhabditis elegans. Five predictive models were built using the random forest algorithm with molecular fingerprints and/or molecular descriptors as features. The best performing classifier, built using molecular descriptors, achieved an area under the curve score (AUC) of 0.815 for classifying the compounds in the test set. The features of the model were ranked using the Gini importance measure of the random forest algorithm. The top 30 features included descriptors related to atom and bond counts, topological and partial charge properties. The model was applied to predict the class of compounds in an external database, consisting of 1738 small-molecules. The chemical compounds of the screening database with a predictive probability of ≥ 0.80 for increasing the lifespan of Caenorhabditis elegans were broadly separated into (1) flavonoids, (2) fatty acids and conjugates, and (3) organooxygen compounds.
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http://dx.doi.org/10.1038/s41598-021-93070-6 | DOI Listing |
Phenomics
October 2024
School of Kinesiology, Shanghai University of Sport, Qingyuanhuan Road, #650, Yangpu District, Shanghai, 200438 China.
Unlabelled: The field of competitive swimming lacks broadly applicable predictive models for talent identification across various age groups of adolescent swimmers. This study aimed to construct a predictive model for athletic talent using machine learning methods based on anthropometric and physiological data. Baseline data were collected from 5444 participants aged 10-18 in Shanghai, China, between 2015 and 2018, with 4969 completing a 3-year follow-up.
View Article and Find Full Text PDFFront Mol Biosci
December 2024
Center for Scientific Research, Yunnan University of Chinese Medicine, Kunming, China.
Background: Pterygium is a complex ocular surface disease characterized by the abnormal proliferation and growth of conjunctival and fibrovascular tissues at the corneal-scleral margin. Understanding the underlying molecular mechanisms of pterygium is crucial for developing effective diagnostic and therapeutic strategies.
Methods: To elucidate the molecular mechanisms of pterygium, we conducted a differential gene expression analysis between pterygium and normal conjunctival tissues using high-throughput RNA sequencing.
Front Plant Sci
December 2024
School of Informatics, Hunan University of Chinese Medicine, Changsha, China.
Introduction: The Cinnamomum Camphora var. Borneol (CCB) tree is a valuable timber species with significant medicinal importance, widely cultivated in mountainous areas but susceptible to pests and diseases, making manual surveillance costly.
Methods: This paper proposes a method for detecting CCB pests and diseases using Unmanned aerial vehicle (UAV) as an advanced data collection carrier, capable of gathering large-scale data.
Front Plant Sci
December 2024
Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
Estimation of forest biomass at regional scale based on GEDI spaceborne LiDAR data is of great significance for forest quality assessment and carbon cycle. To solve the problem of discontinuous data of GEDI footprints, this study mapped different echo indexes in the footprints to the surface by inverse distance weighted interpolation method, and verified the influence of different number of footprints on the interpolation results. Random forest algorithm was chosen to estimate the spruce-fir biomass combined with the parameters provided by GEDI and 138 spruce-fir sample plots in Shangri-La.
View Article and Find Full Text PDFFront Plant Sci
December 2024
National Forestry and Grassland Administration Engineering Research Centre for Southwest Forest and Grassland Fire Ecological Prevention, College of Forestry, Sichuan Agricultural University, Chengdu, China.
Franch. is a native species in southwestern China, characterized by high polymorphism. However, the environmental drivers of intraspecific variation in its functional traits remain poorly understood.
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