Hystorian: A processing tool for scanning probe microscopy and other n-dimensional datasets.

Ultramicroscopy

University of Geneva, Department of Quantum Matter Physics, 1204, Geneva, Switzerland.

Published: September 2021

AI Article Synopsis

  • Research in materials science requires combining data from various techniques and managing large datasets effectively.
  • Hystorian is a Python package designed to enhance the traceability and reproducibility of data processing by converting proprietary formats into open HDF5 files, allowing for easier data management.
  • Currently, Hystorian offers tools for scanning probe microscopy and x-ray diffraction analysis, while also being flexible enough to integrate with existing processing functions and workflows.

Article Abstract

Research in materials science increasingly depends on the correlation of information from multiple characterisation techniques, acquired in ever larger datasets. Efficient methods of processing and storing these complex datasets are therefore crucial. Reliably keeping track of data processing is also essential to conform with the goals of open science. Here, we introduce Hystorian, a generic materials science data analysis Python package built at its core to improve the traceability, reproducibility, and archival ability of data processing. Proprietary data formats are converted into open hierarchical data format (HDF5) files, with both datasets and subsequent workflows automatically stored into a single location, thus allowing easy management of multiple data types. At present, Hystorian provides a basic scanning probe microscopy and x-ray diffraction analysis toolkit, and is readily extensible to suit user needs. It is also able to wrap over any existing processing functions, making it easy to append in an extant workflow.

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Source
http://dx.doi.org/10.1016/j.ultramic.2021.113345DOI Listing

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