Gene Conversion amongst SINE Elements.

Genes (Basel)

Institute of Experimental Pathology, ZMBE, University of Münster, 48149 Münster, Germany.

Published: June 2021

The process of non-allelic gene conversion acts on homologous sequences during recombination, replacing parts of one with the other to make them uniform. Such concerted evolution is best described as paralogous ribosomal RNA gene unification that serves to preserve the essential house-keeping functions of the converted genes. Transposed elements (TE), especially short interspersed elements (SINE) that have more than a million copies in primate genomes, are a significant source of homologous units and a verified target of gene conversion. The consequences of such a recombination-based process are diverse, including multiplications of functional TE internal binding domains and, for evolutionists, confusing divergent annotations of orthologous transposable elements in related species. We systematically extracted and compared 68,097 insertions in various primates looking for potential events of TE gene conversion and discovered 98 clear cases of - gene conversion, including 64 cases for which the direction of conversion was identified (e.g., S conversion to Y). Gene conversion also does not necessarily affect the entire homologous sequence, and we detected 69 cases of partial gene conversion that resulted in virtual hybrids of two elements. Phylogenetic screening of gene-converted s revealed three clear hotspots of the process in the ancestors of Catarrhini, Hominoidea, and gibbons. In general, our systematic screening of orthologous primate loci for gene-converted TEs provides a new strategy and view of a post-integrative process that changes the identities of such elements.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8230782PMC
http://dx.doi.org/10.3390/genes12060905DOI Listing

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