The Rhizobacterium AVO110 Induces the Expression of Biofilm-Related Genes in Response to Exudates.

The rhizobacterium AVO110 exhibits antagonism toward the phytopathogenic fungus . This strain efficiently colonizes hyphae and is able to feed on their exudates. Here, we report the complete genome sequence of AVO110. The phylogeny of all available genomes separates environmental isolates, including AVO110, from those obtained from infected human blood and oyster tissues, which cluster together with . Core and pan-genome analyses showed that strains encode highly heterogenic gene pools, with the AVO110 genome encoding the largest and most exclusive variable region (~1.6 Mb, 1795 genes). The AVO110 singletons include a wide repertoire of genes related to biofilm formation, several of which are transcriptionally modulated by exudates. One of these genes () encodes a GGDEF/EAL domain protein specific to spp. strains isolated primarily from the rhizosphere of diverse plants, but also from soil and water samples. We also show that CmpA has a role in biofilm formation and that the integrity of its EAL domain is involved in this function. This study contributes to a better understanding of the niche-specific adaptations and lifestyles of , including the mycophagous behavior of strain AVO110.