Photochemical reactions are widely used by academic and industrial researchers to construct complex molecular architectures mechanisms that often require harsh reaction conditions. Photodynamics simulations provide time-resolved snapshots of molecular excited-state structures required to understand and predict reactivities and chemoselectivities. Molecular excited-states are often nearly degenerate and require computationally intensive multiconfigurational quantum mechanical methods, especially at conical intersections. Non-adiabatic molecular dynamics require thousands of these computations per trajectory, which limits simulations to ∼1 picosecond for most organic photochemical reactions. Westermayr recently introduced a neural-network-based method to accelerate the predictions of electronic properties and pushed the simulation limit to 1 ns for the model system, methylenimmonium cation (CHNH ). We have adapted this methodology to develop the Python-based, Python Rapid Artificial Intelligence Molecular Dynamics (PyRAIMD) software for the - isomerization of -hexafluoro-2-butene and the 4π-electrocyclic ring-closing of a norbornyl hexacyclodiene. We performed a 10 ns simulation for -hexafluoro-2-butene in just 2 days. The same simulation would take approximately 58 years with traditional multiconfigurational photodynamics simulations. We generated training data by combining Wigner sampling, geometrical interpolations, and short-time quantum chemical trajectories to adaptively sample sparse data regions along reaction coordinates. The final data set of the - isomerization and the 4π-electrocyclic ring-closing model has 6207 and 6267 data points, respectively. The training errors in energy using feedforward neural networks achieved chemical accuracy (0.023-0.032 eV). The neural network photodynamics simulations of -hexafluoro-2-butene agree with the quantum chemical calculations showing the formation of the -product and reactive carbene intermediate. The neural network trajectories of the norbornyl cyclohexadiene corroborate the low-yielding -product, which was absent in the quantum chemical trajectories, and revealed subsequent thermal reactions in 1 ns.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8179587PMC
http://dx.doi.org/10.1039/d0sc05610cDOI Listing

Publication Analysis

Top Keywords

photodynamics simulations
16
quantum chemical
12
photochemical reactions
8
molecular dynamics
8
4π-electrocyclic ring-closing
8
chemical trajectories
8
neural network
8
simulations
5
molecular
5
automatic discovery
4

Similar Publications

Photodynamic inactivation mediated by natural alizarin on bacteria for the safety of fresh-cut apples.

Food Res Int

January 2025

College of Food Science and Engineering, Northwest A&F University, Yangling 712100, Shaanxi, China. Electronic address:

Most photosensitizers have limited responsiveness to visible light, however, visible light is a light source with a wide range of wavelengths and the most common in daily life, and making full use of visible light can help to enhance the photodynamic antimicrobial properties of photosensitizers. To tackle this issue, this study confirmed that alizarin has a good absorption capacity for visible light by UV-DRS analysis. Theoretical calculations showed that alizarin might be excited through the charge transfer (CT) mechanism.

View Article and Find Full Text PDF

In this paper, we report on the measurement of the optical properties (absorption and scattering coefficients) of photoluminescent turbid media using a homemade integrating sphere setup equipped with a tunable monochromatic light source. The hemispherical reflectance and transmission data are analyzed with the radiative transfer equation using a Monte Carlo simulation-based lookup table to obtain the optical properties of the sample. The results are compared with the optical properties received from a classical integrating sphere setup equipped with a broadband white light source.

View Article and Find Full Text PDF

The direct detection of singlet-state oxygen (O) constitutes the holy grail dosimetric method for type-II photodynamic therapy (PDT), a goal that can be quantified using multispectral singlet oxygen near-infrared luminescence dosimetry (MSOLD). The optical properties of tissues, specifically their scattering and absorption coefficients, play a crucial role in determining how the treatment and luminescence light are attenuated. Variations in these properties can significantly impact the spatial distribution of the treatment light and hence the generation of singlet oxygen and the detection of singlet oxygen luminescence signals.

View Article and Find Full Text PDF

X-ray induced photodynamic therapy (XPDT) utilizes self-lighting nanoparticles to combine the benefits of radiotherapy and photodynamic therapy. These nanomaterials transform X-ray to visible light that can be absorbed by nearby photosensitizers and in the presence of surrounding oxygen molecules generates reactive oxygen species, which are very toxic to the cells. Despite many studies conducted on modelling XPDT, little focused on the contribution of each component as well as their synergy effects.

View Article and Find Full Text PDF

Fluorination of Aza-BODIPY for Cancer Cell Plasma Membrane-Targeted Imaging and Therapy.

ACS Appl Mater Interfaces

January 2025

State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences-Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan 430071, China.

Photodynamic therapy (PDT) holds great potential in cancer treatment, leveraging photosensitizers (PSs) to deliver targeted therapy. Fluorination can optimize the physicochemical and biological properties of PSs for better PDT performance. Here, we report some high-performance multifunctional PSs specifically designed for cancer PDT by fluorinating aza-BODIPY with perfluoro--butoxymethyl (PFBM) groups.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!