Pancreatic ductal adenocarcinoma (PDAC) is an aggressive type of cancer with a 5-year survival rate of less than 5%. As in many other diseases, its diagnosis might involve progressive stages. It is common that in biomarker studies referring to PDAC, recruitment involves three groups: healthy individuals, patients that suffer from chronic pancreatitis, and PDAC patients. Early detection and accurate classification of the state of the disease are crucial for patients' successful treatment. ROC analysis is the most popular way to evaluate the performance of a biomarker and the Youden index is commonly employed for cutoff derivation. The so-called generalized Youden index has a drawback in the three-class case of not accommodating the full data set when estimating the optimal cutoffs. In this article, we explore the use of the Euclidean distance of the ROC to the perfection corner for the derivation of cutoffs in trichotomous settings. We construct an inferential framework that involves both parametric and nonparametric techniques. Our methods can accommodate the full information of a given data set and thus provide more accurate estimates in terms of the decision-making cutoffs compared with a Youden-based strategy. We evaluate our approaches through extensive simulations and illustrate them on a PDAC biomarker study.
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http://dx.doi.org/10.1002/sim.9077 | DOI Listing |
Sensors (Basel)
December 2024
Faculty of Computer Science, Polish-Japanese Academy of Information Technology, 86 Koszykowa Street, 02-008 Warsaw, Poland.
Neurodegenerative diseases (NDs), such as Alzheimer's disease (AD) and Parkinson's disease (PD), are debilitating conditions that affect millions worldwide, and the number of cases is expected to rise significantly in the coming years. Because early detection is crucial for effective intervention strategies, this study investigates whether the structural analysis of selected brain regions, including volumes and their spatial relationships obtained from regular T1-weighted MRI scans ( = 168, PPMI database), can model stages of PD using standard machine learning (ML) techniques. Thus, diverse ML models, including Logistic Regression, Random Forest, Support Vector Classifier, and Rough Sets, were trained and evaluated.
View Article and Find Full Text PDFMicroorganisms
December 2024
Science Center for Future Foods, Jiangnan University, Wuxi 214122, China.
The impact of yeast strain selection on bread quality was evaluated using a range of commercial strains, typically employed in various alcoholic beverage productions, to determine their effectiveness in bread making. The final products made from these strains were compared to bread produced using the commercial baker's strain ACY298. Key parameters, including specific volume, hardness, pH, residual sugars, and organic acids, were thoroughly assessed.
View Article and Find Full Text PDFEntropy (Basel)
December 2024
Henan International Joint Laboratory of Intelligent Network Theory and Key Technology, Henan University, Kaifeng 475001, China.
Federated learning enables devices to train models collaboratively while protecting data privacy. However, the computing power, memory, and communication capabilities of IoT devices are limited, making it difficult to train large-scale models on these devices. To train large models on resource-constrained devices, federated split learning allows for parallel training of multiple devices by dividing the model into different devices.
View Article and Find Full Text PDFCancers (Basel)
December 2024
Department of Neurosurgery, Mount Sinai Health System, New York, NY 10029, USA.
Background/objectives: Glioblastoma (GBM) is the most common malignant primary central nervous system tumor with extremely poor prognosis and survival outcomes. Non-invasive methods like radiomic feature extraction, which assess sub-visual imaging features, provide a potentially powerful tool for distinguishing molecular profiles across groups of patients with GBM. Using consensus clustering of MRI-based radiomic features, this study aims to investigate differential gene expression profiles based on radiomic clusters.
View Article and Find Full Text PDFNeural Netw
January 2025
School of Big Data and Computer Science, Guizhou Normal University, Guiyang 550025, China.
Graph Neural Networks (GNNs) have shown remarkable achievements and have been extensively applied in various downstream tasks, such as node classification and community detection. However, recent studies have demonstrated that GNNs are vulnerable to subtle adversarial perturbations on graphs, including node injection attacks, which negatively affect downstream tasks. Existing node injection attacks have mainly focused on the limited local nodes, neglecting the analysis of the whole graph which restricts the attack's ability.
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