Chromosome-level genome assembly of the Chinese longsnout catfish .

Zool Res

Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), College of Fisheries, Southwest University, Chongqing 402460, China.

Published: July 2021

The Chinese longsnout catfish ( Günther) is one of the most economically important freshwater fish in China. As wild populations have declined sharply in recent years, it is also a valuable model for research on sexual dimorphism, comparative biology, and conservation. However, the current lack of high-quality chromosome-level genome information for the species hinders the advancement of comparative genomic analysis and evolutionary studies. Therefore, we constructed the first high-quality chromosome-level reference genome for . The total genome was 703.19 Mb, with 389 contigs and contig N50 length of 4.29 Mb. Using high-throughput chromosome conformation capture (Hi-C) data, the genome sequences (685.53 Mb) were scaffolded into 26 chromosomes ranging from 17.36 to 43.97 Mb, resulting in a chromosomal anchoring rate for the genome of 97.44%. In total, 23 708 protein-coding genes were identified in the genome. Phylogenetic analysis indicated that and its closest related species diverged approximately 26.6 million years ago. This high-quality reference genome of should pave the way for future genomic comparisons and evolutionary research.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317178PMC
http://dx.doi.org/10.24272/j.issn.2095-8137.2020.327DOI Listing

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